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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

Feature/rel filter range #259

Closed pirovc closed 11 months ago

pirovc commented 11 months ago
codecov-commenter commented 11 months ago

Codecov Report

Merging #259 (9f7f6b6) into dev (af00a99) will increase coverage by 11.31%. Report is 108 commits behind head on dev. The diff coverage is 89.12%.

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@@             Coverage Diff             @@
##              dev     #259       +/-   ##
===========================================
+ Coverage   77.66%   88.97%   +11.31%     
===========================================
  Files          22       23        +1     
  Lines        2512     3439      +927     
===========================================
+ Hits         1951     3060     +1109     
+ Misses        561      379      -182
Files Changed Coverage Δ
src/ganon-build/include/ganon-build/Config.hpp 65.07% <61.11%> (+19.62%) :arrow_up:
...c/ganon-classify/include/ganon-classify/Config.hpp 68.90% <75.58%> (+18.90%) :arrow_up:
src/ganon/build_update.py 79.04% <78.88%> (+13.56%) :arrow_up:
src/ganon/tax_util.py 80.32% <80.32%> (ø)
src/ganon/config.py 79.94% <83.33%> (+1.99%) :arrow_up:
src/ganon/classify.py 89.47% <88.23%> (-4.65%) :arrow_down:
src/ganon/ganon.py 89.18% <88.46%> (-4.76%) :arrow_down:
src/ganon-classify/CommandLineParser.cpp 90.12% <91.17%> (+8.07%) :arrow_up:
src/ganon/report.py 91.90% <92.42%> (+3.32%) :arrow_up:
...classify/hierarchical_interleaved_bloom_filter.hpp 93.75% <93.75%> (ø)
... and 9 more

... and 2 files with indirect coverage changes

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