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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

feature/hibf-default #269

Closed pirovc closed 9 months ago

codecov-commenter commented 9 months ago

Codecov Report

Merging #269 (d7d56b2) into dev (af00a99) will increase coverage by 11.09%. Report is 115 commits behind head on dev. The diff coverage is 88.90%.

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@@             Coverage Diff             @@
##              dev     #269       +/-   ##
===========================================
+ Coverage   77.66%   88.76%   +11.09%     
===========================================
  Files          22       23        +1     
  Lines        2512     3515     +1003     
===========================================
+ Hits         1951     3120     +1169     
+ Misses        561      395      -166
Files Coverage Δ
src/utils/include/utils/IBFConfig.hpp 100.00% <100.00%> (ø)
src/utils/include/utils/LCA.hpp 96.92% <100.00%> (+0.14%) :arrow_up:
src/utils/include/utils/StopClock.hpp 100.00% <100.00%> (+55.55%) :arrow_up:
src/utils/include/utils/adjust_seed.hpp 100.00% <100.00%> (ø)
src/ganon-build/CommandLineParser.cpp 89.65% <96.55%> (+1.77%) :arrow_up:
src/ganon-classify/CommandLineParser.cpp 90.24% <91.17%> (+8.19%) :arrow_up:
...classify/hierarchical_interleaved_bloom_filter.hpp 93.75% <93.75%> (ø)
src/ganon/ganon.py 89.18% <88.46%> (-4.76%) :arrow_down:
src/ganon/classify.py 89.47% <88.23%> (-4.65%) :arrow_down:
src/ganon/table.py 97.68% <98.12%> (-1.22%) :arrow_down:
... and 10 more

... and 3 files with indirect coverage changes

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