Closed pirovc closed 9 months ago
Attention: 16 lines
in your changes are missing coverage. Please review.
Comparison is base (
c50223e
) 88.98% compared to head (593f1e4
) 88.76%. Report is 4 commits behind head on master.
Files | Patch % | Lines |
---|---|---|
src/ganon/config.py | 82.14% | 10 Missing :warning: |
src/ganon/build_update.py | 78.57% | 6 Missing :warning: |
:exclamation: Your organization needs to install the Codecov GitHub app to enable full functionality.
:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.
ganon2 is here (v2.0.0)
Changelog:
ganon classify --multiple-matches em/lca
to choose the algorithm to solve reads with multiple-matches.--reassign
option was removed, replaced by--multiple-matches em
.one
(before.lca
inganon classify
and.all
inganon reassign
)ganon classify
can now better control the integrated report generated at the end with--report-type --ranks --min-count
and--skip-report
ganon build
andbuild-custom
now generate an HIBF by default with--level species
by default onganon build
. The boolean--hibf
was removed and--filter-type ibf/hibf
introduced.