ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
Traceback (most recent call last):
File "/home/ubuntu/miniconda3/envs/py310/bin/ganon", line 33, in
sys.exit(load_entry_point('ganon==2.0.0', 'console_scripts', 'ganon')())
File "/home/ubuntu/miniconda3/envs/py310/lib/python3.10/site-packages/ganon/ganon.py", line 53, in main_cli
sys.exit(0 if main() else 1)
File "/home/ubuntu/miniconda3/envs/py310/lib/python3.10/site-packages/ganon/ganon.py", line 44, in main
ret = report(cfg)
File "/home/ubuntu/miniconda3/envs/py310/lib/python3.10/site-packages/ganon/report.py", line 68, in report
default_ranks = [tax.root_name] + cfg.choices_default_ranks
UnboundLocalError: local variable 'tax' referenced before assignment
$ ganon report -x skip --report-type reads -i classify_results.rep -o classify_res
Generating report(s)
Total valid files: 1
Downloading and parsing skip taxonomy
Traceback (most recent call last): File "/home/ubuntu/miniconda3/envs/py310/bin/ganon", line 33, in
sys.exit(load_entry_point('ganon==2.0.0', 'console_scripts', 'ganon')())
File "/home/ubuntu/miniconda3/envs/py310/lib/python3.10/site-packages/ganon/ganon.py", line 53, in main_cli
sys.exit(0 if main() else 1)
File "/home/ubuntu/miniconda3/envs/py310/lib/python3.10/site-packages/ganon/ganon.py", line 44, in main
ret = report(cfg)
File "/home/ubuntu/miniconda3/envs/py310/lib/python3.10/site-packages/ganon/report.py", line 68, in report
default_ranks = [tax.root_name] + cfg.choices_default_ranks
UnboundLocalError: local variable 'tax' referenced before assignment