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pirovc / ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
https://pirovc.github.io/ganon/
MIT License
86 stars 13 forks source link

Feature/ci test hibf #284

Closed pirovc closed 6 months ago

codecov-commenter commented 6 months ago

Codecov Report

Attention: 286 lines in your changes are missing coverage. Please review.

Comparison is base (af00a99) 77.66% compared to head (1fcbab3) 89.80%. Report is 130 commits behind head on dev.

Files Patch % Lines
src/ganon/config.py 84.42% 57 Missing :warning:
src/ganon/tax_util.py 80.40% 48 Missing :warning:
src/ganon/build_update.py 89.07% 39 Missing :warning:
src/ganon/report.py 90.69% 31 Missing :warning:
src/ganon-classify/GanonClassify.cpp 95.27% 22 Missing :warning:
src/ganon-build/include/ganon-build/Config.hpp 61.11% 21 Missing :warning:
...c/ganon-classify/include/ganon-classify/Config.hpp 75.58% 21 Missing :warning:
src/ganon-build/GanonBuild.cpp 95.10% 18 Missing :warning:
src/ganon/reassign.py 95.31% 6 Missing :warning:
src/ganon/util.py 93.90% 5 Missing :warning:
... and 6 more

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #284 +/- ## =========================================== + Coverage 77.66% 89.80% +12.13% =========================================== Files 22 23 +1 Lines 2512 3500 +988 =========================================== + Hits 1951 3143 +1192 + Misses 561 357 -204 ```

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