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pirovc / grimer

GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and metadata with focus on contamination detection.
https://pirovc.github.io/grimer/
MIT License
21 stars 3 forks source link

Working on local samples #1

Closed mr-eyes closed 2 years ago

mr-eyes commented 2 years ago

Hi, Thanks for this awesome tool!

I am studying some samples that might contain microbial and non-microbial eukaryotes. Samples are RNAseq PE and saved locally. Is there a way to run this pipeline to generate such a beautiful report?

Thanks, —Mo

pirovc commented 2 years ago

Hi! You're welcome. GRIMER just provides the visualization step, so you have to come with a table of counts (samples x observations) generated with your method of choice. Once you are there feel free to ask for further assistance.

mr-eyes commented 2 years ago

Got it! Thanks for the quick reply.