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pirovc / metameta

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Combining output from samples? #6

Closed Thomieh73 closed 7 years ago

Thomieh73 commented 7 years ago

Hey Vitor,

this is a general question. After running metameta, I get for each sample a metameta profile. I am not sure if I have missed in the the set-up of the yaml file, but is there a way to combine the profile files for each sample into one big tabular file? Or is that not implemented in the metameta workflow?

Best Thomas

pirovc commented 7 years ago

Hi Thomas,

This functionality is not implemented directly to MetaMeta but I added a extra script that can help you with it under scripts/merge_final_profiles.sh

Arguments are the final profiles in the BioBoxes format. For example: ./merge_final_profiles.sh workdir/sample_*/metametamerge/archaea_bacteria/final.metametamerge.profile.out or ./merge_final_profiles.sh sample1.profile.out sample2.profile.out sample3.profile.out

Best, Vitor

Thomieh73 commented 7 years ago

Hey Vitor, I tried the script and it works perfectly. Thanks for adding te script.

Enjoy the weekend.