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piskvorky / gensim

Topic Modelling for Humans
https://radimrehurek.com/gensim
GNU Lesser General Public License v2.1
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AttributeError: 'dict' object has no attribute '__NUMPY_SETUP__'. Did you mean: 'get_data_files'? #3546

Open Zethson opened 2 months ago

Zethson commented 2 months ago

Problem description

Trying to build my documentation with uv which also installs gensim as a transitive dependency.

Steps/code/corpus to reproduce

uv pip install gensim

but it leads to

error: Failed to prepare distributions
  Caused by: Failed to fetch wheel: gensim==4.1.2
  Caused by: Failed to build: `gensim==4.1.2`
  Caused by: Build backend failed to build wheel through `build_wheel()` with exit status: 1
--- stdout:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-311
creating build/lib.linux-x86_64-cpython-311/gensim
copying gensim/nosy.py -> build/lib.linux-x86_64-cpython-311/gensim
copying gensim/matutils.py -> build/lib.linux-x86_64-cpython-311/gensim
copying gensim/downloader.py -> build/lib.linux-x86_64-cpython-311/gensim
copying gensim/utils.py -> build/lib.linux-x86_64-cpython-311/gensim
copying gensim/__init__.py -> build/lib.linux-x86_64-cpython-311/gensim
copying gensim/interfaces.py -> build/lib.linux-x86_64-cpython-311/gensim
creating build/lib.linux-x86_64-cpython-311/gensim/topic_coherence
copying gensim/topic_coherence/direct_confirmation_measure.py -> build/lib.linux-x86_64-cpython-311/gensim/topic_coherence
copying gensim/topic_coherence/segmentation.py -> build/lib.linux-x86_64-cpython-311/gensim/topic_coherence
copying gensim/topic_coherence/text_analysis.py -> build/lib.linux-x86_64-cpython-311/gensim/topic_coherence
copying gensim/topic_coherence/indirect_confirmation_measure.py -> build/lib.linux-x86_64-cpython-311/gensim/topic_coherence
copying gensim/topic_coherence/aggregation.py -> build/lib.linux-x86_64-cpython-311/gensim/topic_coherence
copying gensim/topic_coherence/__init__.py -> build/lib.linux-x86_64-cpython-311/gensim/topic_coherence
copying gensim/topic_coherence/probability_estimation.py -> build/lib.linux-x86_64-cpython-311/gensim/topic_coherence
creating build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/benchmark.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/make_wiki_online_nodebug.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/word2vec_standalone.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/glove2word2vec.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/__init__.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/segment_wiki.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/make_wikicorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/make_wiki_online.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/make_wiki.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/package_info.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
copying gensim/scripts/word2vec2tensor.py -> build/lib.linux-x86_64-cpython-311/gensim/scripts
creating build/lib.linux-x86_64-cpython-311/gensim/similarities
copying gensim/similarities/docsim.py -> build/lib.linux-x86_64-cpython-311/gensim/similarities
copying gensim/similarities/annoy.py -> build/lib.linux-x86_64-cpython-311/gensim/similarities
copying gensim/similarities/levenshtein.py -> build/lib.linux-x86_64-cpython-311/gensim/similarities
copying gensim/similarities/__init__.py -> build/lib.linux-x86_64-cpython-311/gensim/similarities
copying gensim/similarities/nmslib.py -> build/lib.linux-x86_64-cpython-311/gensim/similarities
copying gensim/similarities/termsim.py -> build/lib.linux-x86_64-cpython-311/gensim/similarities
creating build/lib.linux-x86_64-cpython-311/gensim/parsing
copying gensim/parsing/preprocessing.py -> build/lib.linux-x86_64-cpython-311/gensim/parsing
copying gensim/parsing/__init__.py -> build/lib.linux-x86_64-cpython-311/gensim/parsing
copying gensim/parsing/porter.py -> build/lib.linux-x86_64-cpython-311/gensim/parsing
creating build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_nmf.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_ensemblelda.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_corpora_dictionary.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_ldamodel.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_doc2vec.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_dtm.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_tfidfmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_phrases.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_matutils.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/basetmtests.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/utils.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_word2vec.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_normmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_keyedvectors.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_ldaseqmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_rpmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_parsing.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_segmentation.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_glove2word2vec.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/simspeed.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/__init__.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_atmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_lee.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_translation_matrix.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_sharded_corpus.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_api.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/simspeed2.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_lda_callback.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_scripts.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/svd_error.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_lsimodel.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_tmdiff.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_aggregation.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_utils.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_corpora.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_logentropy_model.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_similarity_metrics.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_text_analysis.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_coherencemodel.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_fasttext.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_similarities.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_poincare.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_datatype.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_hdpmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_corpora_hashdictionary.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_probability_estimation.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_indirect_confirmation.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_direct_confirmation.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_miislita.py -> build/lib.linux-x86_64-cpython-311/gensim/test
copying gensim/test/test_big.py -> build/lib.linux-x86_64-cpython-311/gensim/test
creating build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/keyedvectors.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/lsi_dispatcher.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/doc2vec.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/lsi_worker.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/tfidfmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/phrases.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/logentropy_model.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/normmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/nmf.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/atmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/lsimodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/poincare.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/word2vec.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/translation_matrix.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/ldamulticore.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/__init__.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/lda_dispatcher.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/rpmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/ldaseqmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/callbacks.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/coherencemodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/lda_worker.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/ldamodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/fasttext.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/basemodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/ensemblelda.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/_fasttext_bin.py -> build/lib.linux-x86_64-cpython-311/gensim/models
copying gensim/models/hdpmodel.py -> build/lib.linux-x86_64-cpython-311/gensim/models
creating build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/indexedcorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/mmcorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/dictionary.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/textcorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/wikicorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/bleicorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/__init__.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/lowcorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/csvcorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/sharded_corpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/ucicorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/svmlightcorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/malletcorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/hashdictionary.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
copying gensim/corpora/opinosiscorpus.py -> build/lib.linux-x86_64-cpython-311/gensim/corpora
running egg_info
writing gensim.egg-info/PKG-INFO
writing dependency_links to gensim.egg-info/dependency_links.txt
writing requirements to gensim.egg-info/requires.txt
writing top-level names to gensim.egg-info/top_level.txt
--- stderr:
Traceback (most recent call last):
  File "<string>", line 11, in <module>
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/build_meta.py", line 415, in build_wheel
    return self._build_with_temp_dir(
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/build_meta.py", line 397, in _build_with_temp_dir
    self.run_setup()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/build_meta.py", line 497, in run_setup
    super().run_setup(setup_script=setup_script)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/build_meta.py", line 313, in run_setup
    exec(code, locals())
  File "<string>", line 339, in <module>
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/__init__.py", line 103, in setup
    return distutils.core.setup(**attrs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 184, in setup
    return run_commands(dist)
           ^^^^^^^^^^^^^^^^^^
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 200, in run_commands
    dist.run_commands()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 970, in run_commands
    self.run_command(cmd)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/dist.py", line 974, in run_command
    super().run_command(command)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 989, in run_command
    cmd_obj.run()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/bdist_wheel.py", line 373, in run
    self.run_command("build")
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
    self.distribution.run_command(command)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/dist.py", line 974, in run_command
    super().run_command(command)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 989, in run_command
    cmd_obj.run()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/command/build.py", line 135, in run
    self.run_command(cmd_name)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
    self.distribution.run_command(command)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/dist.py", line 974, in run_command
    super().run_command(command)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 989, in run_command
    cmd_obj.run()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/build_py.py", line 75, in run
    self.build_package_data()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/build_py.py", line 172, in build_package_data
    for target, srcfile in self._get_package_data_output_mapping():
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/build_py.py", line 164, in _get_package_data_output_mapping
    for package, src_dir, build_dir, filenames in self.data_files:
                                                  ^^^^^^^^^^^^^^^
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/build_py.py", line 84, in __getattr__
    self.data_files = self._get_data_files()
                      ^^^^^^^^^^^^^^^^^^^^^^
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/build_py.py", line 96, in _get_data_files
    self.analyze_manifest()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/build_py.py", line 194, in analyze_manifest
    self.run_command('egg_info')
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
    self.distribution.run_command(command)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/dist.py", line 974, in run_command
    super().run_command(command)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 989, in run_command
    cmd_obj.run()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 321, in run
    self.find_sources()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 329, in find_sources
    mm.run()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 550, in run
    self.add_defaults()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 588, in add_defaults
    sdist.add_defaults(self)
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/command/sdist.py", line 102, in add_defaults
    super().add_defaults()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/command/sdist.py", line 250, in add_defaults
    self._add_defaults_ext()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/command/sdist.py", line 334, in _add_defaults_ext
    build_ext = self.get_finalized_command('build_ext')
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 303, in get_finalized_command
    cmd_obj.ensure_finalized()
  File "/home/docs/.cache/uv/builds-v0/.tmp3BpLE6/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized
    self.finalize_options()
  File "<string>", line 109, in finalize_options
AttributeError: 'dict' object has no attribute '__NUMPY_SETUP__'. Did you mean: 'get_data_files'?
---

https://readthedocs.org/projects/ehrapy/builds/25030940/

Versions

Can't provide the exact versions because it's on RTD, but Python 3.11, Numpy < 2.0.0

poudrouxj commented 3 days ago

In its current form, uv won't be the right fit for all projects. pip is a mature and stable tool, with extensive support for an extremely wide range of use cases and a focus on compatibility. While uv supports a large fraction of the pip interface, it lacks support for some of its legacy features, like .egg distributions.

https://astral.sh/blog/uv

pip install gensim works though 🤔