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pitt-crc / lmod_tracking

Database ingestion for Lmod usage logs
https://crc-pages.pitt.edu/lmod_tracking/
GNU General Public License v3.0
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Bump the python-dependencies group with 4 updates #63

Closed dependabot[bot] closed 9 months ago

dependabot[bot] commented 10 months ago

Updates the requirements on alembic, asyncpg, sqlalchemy and mkdocstrings to permit the latest version. Updates alembic to 1.12.1

Release notes

Sourced from alembic's releases.

1.12.1

Released: October 26, 2023

usecase

  • [usecase] Alembic now accommodates for Sequence and Identity that support dialect kwargs. This is a change that will be added to SQLAlchemy v2.1.

    References: #1304

bug

  • [bug] [autogenerate] [regression] Fixed regression caused by #879 released in 1.7.0 where the ".info" dictionary of Table would not render in autogenerate create table statements. This can be useful for custom create table DDL rendering schemes so it is restored.

    References: #1329

  • [bug] [typing] Improved typing in the EnvironmentContext.configure.process_revision_directives callable to better indicate that the passed-in type is MigrationScript, not the MigrationOperation base class, and added typing to the example at cookbook_no_empty_migrations to illustrate.

    References: #1325

  • [bug] [operations] Repaired ExecuteSQLOp so that it can participate in "diff" operations; while this object is typically not present in a reflected operation stream, custom hooks may be adding this construct where it needs to have the correct to_diff_tuple() method. Pull request courtesy Sebastian Bayer.

    References: #1335

  • [bug] [typing] Improved the op.execute() method to correctly accept the Executable type that is the same which is used in SQLAlchemy Connection.execute(). Pull request courtesy Mihail Milushev.

    References: #1058, #1277

  • [bug] [typing] Improve typing of the revision parameter in various command functions.

    References: #930

  • [bug] [typing] Properly type the Operations.create_check_constraint.condition

... (truncated)

Commits


Updates asyncpg to 0.29.0

Release notes

Sourced from asyncpg's releases.

v0.29.0

Minor fixes and improvements.

Improvements

Fixes

  • When prepared statements are disabled, avoid relying on them harder (#1065) (by @​elprans in cbf64e18)

  • Handle environments with HOME set to a not-a-directory (#1063) (by @​elprans in af922bcf)

  • Fix handling of non-ASCII passwords (#1062) (by @​elprans in 89d5bd03)

  • Disable JIT while doing type introspection (#1082) (by @​elprans in f21ebf64)

  • Remove connection parameter caching in Pool (#1053) (by @​ermakov-oleg in 4ddb0397)

  • Switch to Python 3.12-style wait_for (#1086) (by @​elprans in 4bdd8a7e)

  • Update automatic PostGIS type conversion for Shapely 2.0 (#1085) (by @​ChimneySwift in 8b45beb4)

  • Use the timeout context manager in the connection path (#1087) (by @​elprans in 313b2b2b)

... (truncated)

Commits
  • 74f3a00 asyncpg v0.29.0
  • d7faaff fix: allow host tuple (#1021)
  • b2697ff Add query logging callbacks and context manager (#1043)
  • 93a6f79 Cut BaseProtocol circular reference on close. (#1049)
  • ca9f03b Close cursor portals once the iterator is exhausted (#1088)
  • b7ffab6 Add support for the WHERE clause in copy_to methods (#941)
  • 70c8bd8 Use cleanup_ctx in pool usage doc (#878)
  • ccc7baf Small fix for documentation on using SSL in Connection (#995)
  • 313b2b2 Use the timeout context manager in the connection path (#1087)
  • 8b45beb Update automatic PostGIS type conversion for Shapely 2.0 (#1085)
  • Additional commits viewable in compare view


Updates sqlalchemy to 2.0.23

Release notes

Sourced from sqlalchemy's releases.

2.0.23

Released: November 2, 2023

orm

  • [orm] [usecase] Implemented the _orm.Session.bulk_insert_mappings.render_nulls parameter for new style bulk ORM inserts, allowing render_nulls=True as an execution option. This allows for bulk ORM inserts with a mixture of None values in the parameter dictionaries to use a single batch of rows for a given set of dicationary keys, rather than breaking up into batches that omit the NULL columns from each INSERT.

    References: #10575

  • [orm] [bug] Fixed issue where the __allow_unmapped__ directive failed to allow for legacy Column / deferred() mappings that nonetheless had annotations such as Any or a specific type without Mapped[] as their type, without errors related to locating the attribute name.

    References: #10516

  • [orm] [bug] Fixed caching bug where using the _orm.with_expression() construct in conjunction with loader options _orm.selectinload(), _orm.lazyload() would fail to substitute bound parameter values correctly on subsequent caching runs.

    References: #10570

  • [orm] [bug] Fixed bug in ORM annotated declarative where using a ClassVar that nonetheless referred in some way to an ORM mapped class name would fail to be interpreted as a ClassVar that's not mapped.

    References: #10472

sql

  • [sql] [usecase] Implemented "literal value processing" for the Interval datatype for both the PostgreSQL and Oracle dialects, allowing literal rendering of interval values. Pull request courtesy Indivar Mishra.

    References: #9737

  • [sql] [bug] Fixed issue where using the same bound parameter more than once with literal_execute=True in some combinations with other literal rendering parameters would cause the wrong values to render due to an iteration issue.

... (truncated)

Commits


Updates mkdocstrings to 0.24.0

Release notes

Sourced from mkdocstrings's releases.

0.24.0

0.24.0 - 2023-11-14

Compare with 0.23.0

Features

Bug Fixes

Code Refactoring

Changelog

Sourced from mkdocstrings's changelog.

0.24.0 - 2023-11-14

Compare with 0.23.0

Features

Bug Fixes

Code Refactoring

0.23.0 - 2023-08-28

Compare with 0.22.0

Breaking Changes

  • Removed BaseCollector and BaseRenderer classes: they were merged into the BaseHandler class.
  • Removed the watch feature, as MkDocs now provides it natively.
  • Removed support for selection and rendering keys in YAML blocks: use options instead.
  • Removed support for loading handlers from the mkdocstrings.handler namespace. Handlers must now be packaged under the mkdocstrings_handlers namespace.

Features

  • Register all anchors for each object in the inventory (228fb73 by Timothée Mazzucotelli).

Bug Fixes

  • Don't add codehilite CSS class to inline code (7690d41 by Timothée Mazzucotelli).
  • Support cross-references for API docs rendered in top-level index page (b194452 by Timothée Mazzucotelli).

Code Refactoring

  • Sort inventories before writing them to disk (9371e9f by Timothée Mazzucotelli).
  • Stop accepting sets as return value of get_anchors (only tuples), to preserve order (2e10374 by Timothée Mazzucotelli).
  • Remove deprecated parts (0a90a47 by Timothée Mazzucotelli).
  • Use proper parameters in Inventory.register method (433c6e0 by Timothée Mazzucotelli).

0.22.0 - 2023-05-25

Compare with 0.21.2

Features

... (truncated)

Commits
  • 032e417 chore: Prepare release 0.24.0
  • ce84dd5 feat: Cache downloaded inventories as local file
  • 4a97755 docs: Make recipe work with MkDocs -f option
  • b3edf89 ci: Some typing fixes/ignore
  • d74fada tests: Stop passing config file path to MkDocsConfig
  • 4dbb6d6 ci: Ruff auto-fix
  • 39694ac chore: Template upgrade
  • afc4ea4 fix: custom_templates config was dropped in previous commit (#630)
  • b61d4d1 refactor: Drop support for MkDocs < 1.4, modernize usages
  • 370a61d fix: Make custom_templates relative to the config file
  • Additional commits viewable in compare view


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dependabot[bot] commented 9 months ago

Superseded by #64.