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pitt-crc / lmod_tracking

Database ingestion for Lmod usage logs
https://crc-pages.pitt.edu/lmod_tracking/
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Bump the python-dependencies group with 4 updates #64

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 6 months ago

Updates the requirements on alembic, asyncpg, sqlalchemy and mkdocstrings to permit the latest version. Updates alembic to 1.13.1

Release notes

Sourced from alembic's releases.

1.13.1

Released: December 20, 2023

bug

  • [bug] [autogenerate] Fixed Rewriter so that more than two instances could be chained together correctly, also allowing multiple process_revision_directives callables to be chained. Pull request courtesy zrotceh.

    References: #1337

  • [bug] [environment] Fixed issue where the method EnvironmentContext.get_x_argument() using the EnvironmentContext.get_x_argument.as_dictionary parameter would fail if an argument key were passed on the command line as a name alone, that is, without an equal sign = or a value. Behavior is repaired where this condition is detected and will return a blank string for the given key, consistent with the behavior where the = sign is present and no value. Pull request courtesy Iuri de Silvio.

    References: #1369

  • [bug] [autogenerate] Fixed issue where the "unique" flag of an Index would not be maintained when generating downgrade migrations. Pull request courtesy Iuri de Silvio.

    References: #1370

  • [bug] [versioning] Fixed bug in versioning model where a downgrade across a revision with two down revisions with one down revision depending on the other, would produce an erroneous state in the alembic_version table, making upgrades impossible without manually repairing the table. Thanks much to Saif Hakim for the great work on this.

    References: #1373

  • [bug] [typing] Updated pep-484 typing to pass mypy "strict" mode, however including per-module qualifications for specific typing elements not yet complete. This allows us to catch specific typing issues that have been ongoing such as import symbols not properly exported.

    References: #1377

Commits


Updates asyncpg to 0.29.0

Release notes

Sourced from asyncpg's releases.

v0.29.0

Minor fixes and improvements.

Improvements

Fixes

  • When prepared statements are disabled, avoid relying on them harder (#1065) (by @​elprans in cbf64e18)

  • Handle environments with HOME set to a not-a-directory (#1063) (by @​elprans in af922bcf)

  • Fix handling of non-ASCII passwords (#1062) (by @​elprans in 89d5bd03)

  • Disable JIT while doing type introspection (#1082) (by @​elprans in f21ebf64)

  • Remove connection parameter caching in Pool (#1053) (by @​ermakov-oleg in 4ddb0397)

  • Switch to Python 3.12-style wait_for (#1086) (by @​elprans in 4bdd8a7e)

  • Update automatic PostGIS type conversion for Shapely 2.0 (#1085) (by @​ChimneySwift in 8b45beb4)

  • Use the timeout context manager in the connection path (#1087) (by @​elprans in 313b2b2b)

... (truncated)

Commits
  • 74f3a00 asyncpg v0.29.0
  • d7faaff fix: allow host tuple (#1021)
  • b2697ff Add query logging callbacks and context manager (#1043)
  • 93a6f79 Cut BaseProtocol circular reference on close. (#1049)
  • ca9f03b Close cursor portals once the iterator is exhausted (#1088)
  • b7ffab6 Add support for the WHERE clause in copy_to methods (#941)
  • 70c8bd8 Use cleanup_ctx in pool usage doc (#878)
  • ccc7baf Small fix for documentation on using SSL in Connection (#995)
  • 313b2b2 Use the timeout context manager in the connection path (#1087)
  • 8b45beb Update automatic PostGIS type conversion for Shapely 2.0 (#1085)
  • Additional commits viewable in compare view


Updates sqlalchemy to 2.0.24

Release notes

Sourced from sqlalchemy's releases.

2.0.24

Released: December 28, 2023

orm

  • [orm] [bug] Improved a fix first implemented for #3208 released in version 0.9.8, where the registry of classes used internally by declarative could be subject to a race condition in the case where individual mapped classes are being garbage collected at the same time while new mapped classes are being constructed, as can happen in some test suite configurations or dynamic class creation environments. In addition to the weakref check already added, the list of items being iterated is also copied first to avoid "list changed while iterating" errors. Pull request courtesy Yilei Yang.

    This change is also backported to: 1.4.51

    References: #10782

  • [orm] [bug] Fixed issue where use of _orm.foreign() annotation on a non-initialized _orm.mapped_column() construct would produce an expression without a type, which was then not updated at initialization time of the actual column, leading to issues such as relationships not determining use_get appropriately.

    References: #10597

  • [orm] [bug] Improved the error message produced when the unit of work process sets the value of a primary key column to NULL due to a related object with a dependency rule on that column being deleted, to include not just the destination object and column name but also the source column from which the NULL value is originating. Pull request courtesy Jan Vollmer.

    References: #10668

  • [orm] [bug] Modified the __init_subclass__() method used by _orm.MappedAsDataclass, _orm.DeclarativeBase and _orm.DeclarativeBaseNoMeta to accept arbitrary **kw and to propagate them to the super() call, allowing greater flexibility in arranging custom superclasses and mixins which make use of __init_subclass__() keyword arguments. Pull request courtesy Michael Oliver.

    References: #10732

  • [orm] [bug] Ensured the use case of Bundle objects used in the returning() portion of ORM-enabled INSERT, UPDATE and DELETE statements is tested and works fully. This was never explicitly implemented or

... (truncated)

Commits


Updates mkdocstrings to 0.24.0

Release notes

Sourced from mkdocstrings's releases.

0.24.0

0.24.0 - 2023-11-14

Compare with 0.23.0

Features

Bug Fixes

Code Refactoring

Changelog

Sourced from mkdocstrings's changelog.

0.24.0 - 2023-11-14

Compare with 0.23.0

Features

Bug Fixes

Code Refactoring

0.23.0 - 2023-08-28

Compare with 0.22.0

Breaking Changes

  • Removed BaseCollector and BaseRenderer classes: they were merged into the BaseHandler class.
  • Removed the watch feature, as MkDocs now provides it natively.
  • Removed support for selection and rendering keys in YAML blocks: use options instead.
  • Removed support for loading handlers from the mkdocstrings.handler namespace. Handlers must now be packaged under the mkdocstrings_handlers namespace.

Features

  • Register all anchors for each object in the inventory (228fb73 by Timothée Mazzucotelli).

Bug Fixes

  • Don't add codehilite CSS class to inline code (7690d41 by Timothée Mazzucotelli).
  • Support cross-references for API docs rendered in top-level index page (b194452 by Timothée Mazzucotelli).

Code Refactoring

  • Sort inventories before writing them to disk (9371e9f by Timothée Mazzucotelli).
  • Stop accepting sets as return value of get_anchors (only tuples), to preserve order (2e10374 by Timothée Mazzucotelli).
  • Remove deprecated parts (0a90a47 by Timothée Mazzucotelli).
  • Use proper parameters in Inventory.register method (433c6e0 by Timothée Mazzucotelli).

0.22.0 - 2023-05-25

Compare with 0.21.2

Features

... (truncated)

Commits
  • 032e417 chore: Prepare release 0.24.0
  • ce84dd5 feat: Cache downloaded inventories as local file
  • 4a97755 docs: Make recipe work with MkDocs -f option
  • b3edf89 ci: Some typing fixes/ignore
  • d74fada tests: Stop passing config file path to MkDocsConfig
  • 4dbb6d6 ci: Ruff auto-fix
  • 39694ac chore: Template upgrade
  • afc4ea4 fix: custom_templates config was dropped in previous commit (#630)
  • b61d4d1 refactor: Drop support for MkDocs < 1.4, modernize usages
  • 370a61d fix: Make custom_templates relative to the config file
  • Additional commits viewable in compare view


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dependabot[bot] commented 3 months ago

Looks like these dependencies are updatable in another way, so this is no longer needed.