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pjeraldo / imtornado2

Illinois Mayo Taxonomy Operations for RNA Database Operations
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Pipeline stops with sed: 1 error #4

Open kliere opened 7 years ago

kliere commented 7 years ago

In particular:

Converting FASTQ to FASTA Remove ambits... Rename and trim Processing 16SA_R1.trim.fasta and 16SA_R2.trim.fasta Processing 16S_R1.trim.fasta and 16S_R2.trim.fasta Files Name_R1.fasta and Name_R2.fasta saved, sed: 1: "Name.common.accnos": invalid command code B

What does this mean - and more important, how do I get around this error? :-)

Cheers,

Karsten

bmillerlab commented 7 years ago

You probably already solved this, but I had the problem and solved it the way noted in the closed issue above: "problem running test shell script data using "tornado_run_pipeline.sh"