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pkalbers / geva

Genealogical Estimation of Variant Age (GEVA)
MIT License
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Conversion to vcf #2

Closed standard-aaron closed 5 years ago

standard-aaron commented 5 years ago

This is not an issue per se, but I'm curious whether you have any suggestions/scripts for converting MS-style output to vcf format (which the documentation states is the only input format, unless I missed something)?

Thanks, Aaron

hyanwong commented 5 years ago

@35ajstern - we have some code that will convert the VCF output from msprime into a format suitable for input into GEVA. We can post it here if you like. If you specifically want ms output, then msprime now has a from_ms converter too.