Now schema is one of the configuration options. It would be more realistic to read it from the analyses output. Each analysis creates a JSON file containing the input parameters, the tool should use that if it is available.
Configuration value schema is still mentioned in README and used in classes/Utils/Configuration.php so this cannot be closed. The schema type should not be settable at two places but only in analysis output.
Now
schema
is one of the configuration options. It would be more realistic to read it from the analyses output. Each analysis creates a JSON file containing the input parameters, the tool should use that if it is available.