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plagnollab / DNASeq_pipeline

Pipeline in place at the UGI for DNA level analysis
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mitochondrial DNA #20

Open pontikos opened 9 years ago

pontikos commented 9 years ago

We should map reads to MT DNA too. Is it in the reference?

vplagnol commented 9 years ago

yes definitely in the reference. I just don't have all the merged gVCF files for these, only some. But yes we should include this as well.

pontikos commented 9 years ago

Ok, I guess if we have DNA samples from mitochondrial-rich cell types that would be good resource.

On 16 January 2015 at 14:48, Vincent Plagnol notifications@github.com wrote:

yes definitely in the reference. I just don't have all the merged gVCF files for these, only some. But yes we should include this as well.

— Reply to this email directly or view it on GitHub https://github.com/vplagnol/pipelines/issues/20#issuecomment-70263408.

vplagnol commented 9 years ago

Mostly matters for Shamima Rahman who studies mitochondrial diseases