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plagnollab / RNASeq_pipeline

Set of scripts for RNA-Seq data processing
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RData file saved by counts_prepare_pipeline #2

Open kittyl opened 9 years ago

kittyl commented 9 years ago

It would be good if the RData file saved has the sampleIDs as colnames instead of the file path.

vplagnol commented 9 years ago

Completely agreed but I could not find how to pull the sampleID from the BAM file in R. If you have a quick way to do that let me know.

On Thu, Feb 5, 2015 at 10:06 AM, kittyl notifications@github.com wrote:

It would be good if the RData file saved has the sampleIDs as colnames instead of the file path.

— Reply to this email directly or view it on GitHub https://github.com/plagnollab/RNASeq_pipeline/issues/2.

Vincent Plagnol University College London Genetics Institute Darwin building, office 210 Gower Street, London, WC1E 6BT Cell: +44-(0)7946-546923 Office: +44-(0) 2031-084002 Website: http://www.ucl.ac.uk/ugi/research/vincentplagnol Lab blog: http://plagnol-lab.blogspot.co.uk/