the fork planemo-autoupdate/tools-iuc is currently not synced.
so the for loop will include deprecated tools (and exclude new tools). For these the git checkout -b $REPO upstream/master will use the newest upstream branch where the tool dir is absent leading to an error. This should fix the current failure of the bot.
I guess the same needs to be done for the other repos, but I won't be able to do so.
in the future we might try to deleted branches and PR if tools are deprecated
the fork
planemo-autoupdate/tools-iucis currently not synced.so the for loop will include deprecated tools (and exclude new tools). For these the
git checkout -b $REPO upstream/masterwill use the newest upstream branch where the tool dir is absent leading to an error. This should fix the current failure of the bot.I guess the same needs to be done for the other repos, but I won't be able to do so.
in the future we might try to deleted branches and PR if tools are deprecated