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plantimals / 2vcf

convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
MIT License
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update reference to include OmniExpress v1,2,3 and GSA v1,2,3 #14

Closed plantimals closed 5 years ago

plantimals commented 5 years ago

In order to more fully support the evolving suite of markers assayed, I am pulling the RSID's from Illumina's manifest files for the OmniExpress 23 v1,2,3 and Global Screening Array 24 v1,2,3 and compiling them into a single reference. I am using the most recent dbSNP build ( https://github.com/ncbi/dbsnp/tree/master/Build%20Announcements/151 ). I inner-join the list of assayed RSID's to the dbSNP build 151 VCF.

this should clear up some of the issues seen in #13 #7

plantimals commented 5 years ago

this issue is closed by publishing v2.0 of the 2vcf reference vcf: http://www.openb.io/posts/2vcf-reference-v2-released/

plantimals commented 5 years ago

this is addressed by 2vcf reference v2.0. http://www.openb.io/2vcf/