Genotype next steps (branch : feature/ongoing genotype) - Githubissues

plantinformatics / pretzel

Javascript full-stack framework for Big Data visualisation and analysis

GNU General Public License v3.0

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Genotype next steps (branch : feature/ongoing genotype) #356

Closed Don-Isdale closed 10 months ago

Don-Isdale commented 1 year ago

feature tracking issue : #338

main features added :

VCF Download
sort samples by LD Block Alt / Ref
Add a button to request all samples
colour axis tracks of VCF by LD Block
call rate filter for samples
abbreviate the sample column heading : show block colour
table performance; adjustable cell size
maximise table height; scroll-bars
MAF and tSNP : LD Block colour; sort, filtering
sample filter and limit
display of multiple datasets, both VCF and non-VCF
Merge Rows view
add extra columns from non-VCF features
controls dialog re-organisations
column headers : height adjustment, dataset colour rectangles
show Ref/Alt just once
interface to germinate BrAPI
support shortbread2 VCF outputs
lookup all datasets with one click
multiple datasets : VCF and non-VCF
intersection of VCF datasets

branch : Feature/ongoing genotype