Extending data/ API for VCF Genotype Search - Githubissues

plantinformatics / pretzel

Javascript full-stack framework for Big Data visualisation and analysis

GNU General Public License v3.0

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Extending data/ API for VCF Genotype Search #384

Open Don-Isdale opened 3 weeks ago

Don-Isdale commented 3 weeks ago

Part of #383

Observable outcomes / Acceptance criteria :

Functions utilising API endpoint to :

API endpoint to search for markers in a given VCF (parent reference dataset or block) P -> regions
samples(block) P (returns Promise yielding) -> samples
genotype(block, intervals, samples) P -> values

Measured with :

JSON or screen-shot in web inspector of request and response,

services/

data/
- - api / search / lookup :
- - - [ ] [1-2D] search for markers in a given VCF (parent reference dataset or block) P -> regions
- - - [ ] [3-6H] samples(block) P (returns Promise yielding) -> samples
- - - [ ] [4-8H] genotype(block, intervals, samples) P -> values