plantinformatics / pretzel

Javascript full-stack framework for Big Data visualisation and analysis
GNU General Public License v3.0
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VCF Download : column changes for standard format #410

Open Don-Isdale opened 2 months ago

Don-Isdale commented 2 months ago

Introduction

The Genotype Table enables the user to download a VCF file containing the last-received VCF genotype lookup result from the server.

Testing the downloaded VCF against the standard

Applying vcf-validator to the downloaded VCF shows some differences from the standard, for example swap the order of the POS and ID columns, add columns QUAL, FILTER, INFO.