sprint 4: topics to be covered

[myrmoteras]

Topics for Sprint 4

Planning

Production

• QC strategy: what to QC, eg holotypes vs articles to
• QC analysis: how to reduce QC. What are the most common erros and look into how to remove them (see also https://github.com/plazi/arcadia-project/issues/247)
• Planning of next BigBatch

[myrmoteras]

Disentis preparation

• organization
• data preparation
• processing workflows (inlcuding BHL import?)

[flsimoes]

Issues

• Admin
  • [ ] POA/Disentis
  • [ ] People
• Annostor
  • [ ] Annostor, uses, implementations, roadmap, etc ]
  • [x] review annotation workflow Annestore-TB-BLR/Zenodo, also in the context of the Plazi workflow
• Dashboards
  • [x] provide an overview of the dashboards we have
  • [ ] decide what dashboards to use for Disentis
• GGI/TB
  • [x] Appendices counted as figures (most are actually tables)
  • [ ] Senckenberg Licenses (https://www.senckenberg.de/en/science/senckenberg-publications/scientific-journals/soil-organisms/terms/)
  • [x] review online GG for particular tasks
  • [x] What to do if journals have .xml copies (not TaxPub)?
  • [x] Pensoft duplicates
  • [x] Decoding Issues and when/how to report and work on them
  • [x] Catching licenses via template
  • [x] Processing in other languages?
  • [ ] tables
    • [ ] table treatments, material citations
  • [ ] Slim Versions
    • [ ] Can we make changes to that? Improvements?
• [x] Zenodo
  • [x] How to make searches with more than one attribute?
  • [x] InvenioRDM
    • [x] Add more filters in the search sidebard (such as journals)

Misc

• what could be AI contribution to the Plazi workflow?
• JATS
  • enhancement of schema
  • provision of a gold standard JATS corpus
  • conversion of GGXML to JATS
  • set up QC workflow to fix errors

[myrmoteras]

Issues

• GGI
  • tables
  • table treatments, material citations

[myrmoteras]

BLR

Query BLR

• get an introduction to understand how to query Zenodo (see https://github.com/plazi/Biodiversity-Literature-Repository/issues/103)

[myrmoteras]

Import of checklists to CLB -

see issue

organize a zoom with Markus, Guido, Felipe to discuss how to optimize the workflow to import checklists to CLB (Monday 3:30pm via Zoom)

[myrmoteras]

Meetings, conferences

• TDWG 2024: Deadline for abstracts April 19
• 2024

[myrmoteras]

Administration

• Human resources
• POA
• Projects

[myrmoteras]

TB API

• presentation of the status and documentation

[myrmoteras]

Projects: ongoing

• Overview

  BiCIKL

• to be done by April 30

  BiCIKL+

• status

  Metaplantcode

• status

Projects: potential

[myrmoteras]

IIIF installation in Zenodo

goal

get the IIIF installed and ready to display annotations

• integration
• Zoom functionality
• caching of images
• upload of images from TB
• WADM upload

priority

high

[myrmoteras]

Zenodo development

1. EU-project and how it relates to "subcommunities" in communities in BLR.

[myrmoteras]

BAFU: Flora Helvetica /Infospecies

1. Review commments re Flora Helvetica, Infospecies

[myrmoteras]

TreatmentBank

1. Query caching in TB (... dauerte es ca. 10 Sekunden. Danach immer blitzschnell (Cache?) Sehr gut möglich, die Daten werden auf Anfrage erstellt und dann so lange wie möglich / aktuell vorgehalten.

[myrmoteras]

Synospecies

1. progress and status quo report @nleanba @retog
2. import and use of entire COL as RDF into Lindas a. import b. updates keep syncronization

[myrmoteras]

List and compare data import into Zenodo

1. Lycophron a. simple uploade b. multistage import (MfN specimens)
2. TB import
3. "WADM import"
4. Taxodros import

update of existing record

synchorniation between partner
needs a revision id

[punkish]

Cache ??

donde esta cache?