plazi / community

This repo is intended to serve as a help desk for TreatmentBank-users.
6 stars 1 forks source link

Many wrong plant species #245

Open mdoering opened 1 year ago

mdoering commented 1 year ago

I looked at the plant species Plazi contributed to the GBIF Backbone in November 2022. There are 3288 plant names incl 2641 species coming from Plazi that are under the Plantae kingdom.

Looking through the first 100 and checking their dataset title this seems often unlikely that these are plants. FOr some reason many animal names get classified as plants. Maybe also vice versa, I haven't checked.

Here is one example I checked in detail, Paracaridilophus retusus from 2011

Including only the classification as given in the article would help to reduce these many errors that come from wrong interpretation.

mdoering commented 1 year ago

Here is the list of the first 100 "plant" species:

prod_checklistbank2=# select kingdom_fk, u.id, u.status, n.scientific_name, d.key, d.title from name_usage u join dataset d on d.key=u.constituent_key left join name n on n.id=u.name_fk where u.dataset_key=nubKey() and deleted is null and publisher=plaziKey() and u.rank='SPECIES' and kingdom_fk=6 limit 100; kingdom_fk | id | status | scientific_name | key |
------------+---------+-------------------+--------------------------------------------------------------------------------+--------------------------------------+---------------------------------------------------------------- 6 | 3652499 | ACCEPTED | Pelexia funkiana (A.Rich. & Galeotti) Schltr. | 6188afdf-b75a-41e8-a066-5d996639c26c | An Updated Checklist of the Orchidaceae of Honduras 6 | 7361683 | ACCEPTED | Chenopodiastrum atriplicinum F.Muell | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 7378480 | ACCEPTED | Chenopodiastrum trigonon Roem. & Schult. | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 7396059 | ACCEPTED | Megorchestes deccanensis Ayri, Kojima & Ramamurthy | d7272d6a-9f26-4e0d-a97a-7026490cafbb | Flea weevils of the genus Megorchestes Kojima (Coleoptera, Curc 6 | 7448398 | ACCEPTED | Acacia minuta (Crawford, 1910) Crawford, 1910 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 7481598 | DOUBTFUL | Disperis reichenbachiana Eeichb | 64d412e1-f6e9-4d6c-8424-814bddeb373e | Orchidaceae (Part 1) part. 6 | 7499402 | ACCEPTED | Alasia alpina Furth & Zhaurova | f2a17677-7481-46ee-aeb4-3c0b63b4c09e | Two new flea beetle genera: Alasia alpina gen. et sp. nov. from 6 | 7515745 | ACCEPTED | Allolepis hollandi | 386120e1-9732-49d5-b6e6-b117c08308d2 | Bothrocara nyx: a new species of eelpout (Perciformes: Zoarcida 6 | 7536571 | ACCEPTED | Volvox chaos Linnaeus, 1758 | 57ea6fdb-2533-44e5-b60b-736758a88d19 | Systema Naturae per regna tria naturae: secundum classes, ordin 6 | 7544641 | DOUBTFUL | Eucalyptus longicornis Crawford, 1910 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 7560661 | ACCEPTED | Parastethynium hirsutum Huber | 35eb0cfa-056a-42fe-a6e8-2030c1fe1e1b | Re-description and biology of Parastethynium maxwelli (Hymenopt 6 | 7571413 | ACCEPTED | Acacia varians (Crawford, 1910) Crawford, 1910 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 7573923 | ACCEPTED | Nitellopsis merianii (Al.Braun ex Unger, 1852) Grambast & Soulie-Marsche, 1972 | d28ddaf8-3b50-46bb-89a4-0e325e35b705 | Taxonomy and palaeobiogeography of charophytes from the Upper E 6 | 7591168 | ACCEPTED | Metrosideros papua Wygodzinsky | 1192f29e-067a-4ffe-9804-22e56539111a | A systematic revision of the Australian ploiarioline thread-leg 6 | 7604461 | ACCEPTED | Caesalpinia cubensis Greenm. ex Combs, 1897 | 15b8d397-0202-450b-a331-a9cba3cf64f9 | A new generic system for the pantropical Caesalpinia group (Leg 6 | 7605478 | ACCEPTED | Gonatopus campbelli Olmi, 1984 | 663199f1-3528-4289-8069-d27552f62f10 | A survey of Dryinidae (Hymenoptera, Chrysidoidea) from Caxiuanã 6 | 7621922 | ACCEPTED | Chenopodiastrum carinatum R.Br.Prod | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 7643980 | ACCEPTED | Ceanothus pubescens (Crawford, 1914) Crawford, 1914 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 7684373 | ACCEPTED | Chenopodiastrum pumilio | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 7685113 | ACCEPTED | Harrisichara lineata Grambast, 1957 | d28ddaf8-3b50-46bb-89a4-0e325e35b705 | Taxonomy and palaeobiogeography of charophytes from the Upper E 6 | 7722102 | DOUBTFUL | Rosa majalis J. | d3bbd281-5d57-4cdc-9b4c-3a44acf44ad4 | 10. Rosa L. 6 | 7735424 | DOUBTFUL | Acacia insolita (Tuthill, 1943) Tuthill, 1943 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 7740311 | ACCEPTED | Chenopodiastrum album Linn. | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 7741626 | ACCEPTED | Tylosema nigerrimum Kieffer | 4ede1b61-2f74-4fdc-b50e-c3ea3ebd4c49 | A world revision of the Pycnostigminae (Cynipoidea: Figitidae) 6 | 7756450 | ACCEPTED | Tylosema ronquisti Buffington | 4ede1b61-2f74-4fdc-b50e-c3ea3ebd4c49 | A world revision of the Pycnostigminae (Cynipoidea: Figitidae) 6 | 7776072 | DOUBTFUL | Rosa orientalis Dupont | d3bbd281-5d57-4cdc-9b4c-3a44acf44ad4 | 10. Rosa L. 6 | 7803563 | ACCEPTED | Chenopodium fasciulosum | abb96834-8ba1-417d-8185-f382bc7d53a7 | Chenopodiaceae (part: Chenopodium) 6 | 7814378 | ACCEPTED | Chenopodiastrum microphyllum F.Muell | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 7877876 | ACCEPTED | Chenopodiastrum cristatum F.Muell | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 7884208 | ACCEPTED | Cosmarium redimitum Borge, 1899 | c6c4fcfe-8e16-4a0e-9110-35c2a3f383de | Taxonomic updates and a new variety of Cosmarium redimitum from 6 | 7911208 | ACCEPTED | Xanthidium nordstedtii (Gronblad) Gronblad & A.M.Scott | bf5e3003-038b-48b4-a214-1fc1a73cd921 | Taxonomic notes on genera Bourrellyodesmus and Xanthidium (Zygn 6 | 7917528 | ACCEPTED | Prosopis malachisis | 85e37851-a91a-406c-8641-d9529f5bf68d | Catalogue of hymenopterous insects collected by Mr. A. R. Walla 6 | 7934943 | ACCEPTED | Nephrolepis pseudolauterbachii | a13e4bde-e674-4aab-8e79-07db3bae1ebe | A conspectus of the native and naturalized species of Nephrolep 6 | 7941146 | ACCEPTED | Parastethynium maxwelli (Girault, 1915) Girault, 1915 | 35eb0cfa-056a-42fe-a6e8-2030c1fe1e1b | Re-description and biology of Parastethynium maxwelli (Hymenopt 6 | 7950886 | ACCEPTED | Artemisia dentata Caldwell, 1937 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 8004263 | ACCEPTED | Pseudostenophyma modesta (Weise, 1921) Weise, 1921 | f2a17677-7481-46ee-aeb4-3c0b63b4c09e | Two new flea beetle genera: Alasia alpina gen. et sp. nov. from 6 | 8005459 | ACCEPTED | Chondrus spermophorus (Linnaeus, 1767) Grev. | 15fc4668-833d-4d5a-a3da-2aea5eb56079 | Chapter 7: Linnaean Plant Names and their Types (part F) 6 | 8079828 | ACCEPTED | Acacia media (Tuthill, 1943) Tuthill, 1943 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 8113931 | ACCEPTED | Megorchestes bolovenensis Kojima | d7272d6a-9f26-4e0d-a97a-7026490cafbb | Flea weevils of the genus Megorchestes Kojima (Coleoptera, Curc 6 | 8132612 | ACCEPTED | Chenopodiastrum ambrosioides Linn. | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 8251341 | ACCEPTED | Acacia inermis Crawford, 1914 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 8274697 | ACCEPTED | Chenopodiastrum nitrariacea F.Muell | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 8293822 | DOUBTFUL | Rosa subcanina (Christ) Christ | d3bbd281-5d57-4cdc-9b4c-3a44acf44ad4 | 10. Rosa L. 6 | 8350811 | ACCEPTED | Tylosema dayae | 4ede1b61-2f74-4fdc-b50e-c3ea3ebd4c49 | A world revision of the Pycnostigminae (Cynipoidea: Figitidae) 6 | 8353796 | ACCEPTED | Pyropia plicata W.A.Nelson, 2013 | 1eda5fde-1c4c-4b63-a61f-0dd4d10471bf | Pyropia plicata sp. nov. (Bangiales, Rhodophyta): naming a comm 6 | 8364072 | ACCEPTED | Gonatopus neotropicus Olmi, 1984 | 663199f1-3528-4289-8069-d27552f62f10 | A survey of Dryinidae (Hymenoptera, Chrysidoidea) from Caxiuanã 6 | 8376679 | DOUBTFUL | Celtis occidentalis (Tuthill, 1939) Tuthill, 1939 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 8400339 | ACCEPTED | Chenopodiastrum auricomum Lindl | f060a9b5-3b35-4f68-aa85-095780d8c17f | Chenopodium & Dysphania 6 | 8405528 | ACCEPTED | Acacia flexuosa Muddiman, Hodkinson & Hollis, 1992 | 561b604f-8a0a-4747-8473-985e3791e07f | An annotated checklist of the psyllids of California (Hemiptera 6 | 8425446 | DOUBTFUL | Calais afghanicus Chassian, 1991 | ca2bff2d-7ebd-4c91-97c9-76fb339a4ef9 | Contribution to the knowledge of Agrypninae (Coleoptera: Elater 6 | 8438769 | ACCEPTED | Isoglossa curvicerca Uvarov, 1938 | 3d57c4ad-02e7-4059-a617-10a01f830571 | Annotated list of Ensifera (Orthoptera) and further records on 6 | 8449484 | DOUBTFUL | Orchis spitzelii Saut | 47455795-ddd8-47b1-8310-bc66cc93b534 | Tour d'Horizon floristique sur les alpes françaises 6 | 8457370 | ACCEPTED | Cineraria incisa Thunb. ex Houtt. | ae864518-b1d7-49da-85dc-905b1a4e6809 | The botanical legacy of Martinus Houttuyn (1720 - 1798) in Gene 6 | 8483000 | DOUBTFUL | Atriplex flabellum Bunge | e9622359-126c-4a82-a5ac-ebc353535498 | A new classification of C 4 - Atriplex species in Russia, with 6 | 8483755 | ACCEPTED | Distylium lanceolatum Chun | 7e0e9a07-5ffb-4cf3-bab5-fd3e69f96946 | The historical relics in Chongqing Natural History Museum: An a 6 | 8485780 | ACCEPTED | Gonatopus kiefferi (Perkins, 1906) Perkins, 1906 | edcd372f-8928-46ed-add7-6eca8ec4379a | Revision of the Australian species of Gonatopus group 5 (Hymeno 6 | 8505852 | ACCEPTED | Gonatopus bartletti Olmi, 1984 | df4249ad-d040-4975-9ef0-372918dde698 | Catalogue of the Dryinidae and Sclerogibbidae (Hymenoptera: Chr 6 | 8510184 | ACCEPTED | Actenosigynes fulvoniger (Michener, 1989) Michener, 1989 | 18c8fb75-4145-4aea-aea8-a56f3af7b51c | A synopsis of Actenosigynes Moure, Graf & Urban, 1999 (Hymenopt 6 | 8517264 | DOUBTFUL | Lepidium campestre (L.) L. | 4d395742-48f4-4e24-9ddc-148e5d053f5d | Lepidium campestre In Häfliger & Wolf, Documenta Ciba Geigy, Di 6 | 8517603 | ACCEPTED | Chenopodium procerum Hoechst | abb96834-8ba1-417d-8185-f382bc7d53a7 | Chenopodiaceae (part: Chenopodium) 6 | 8528145 | ACCEPTED | Huarpea colombiana Fernandez & Sarmiento | 673b497b-9fd1-4fd4-b977-5aef559599fa | A new species of Huarpea Pate, 1947 from Colombia and redescrip 6 | 8541439 | ACCEPTED | Peucedanum schottii Bess. | 47455795-ddd8-47b1-8310-bc66cc93b534 | Tour d'Horizon floristique sur les alpes françaises 6 | 8549925 | ACCEPTED | Phyllocladus cinnabarus Young | df8591ff-8071-4f99-8cb0-d33bc72de107 | Two new species of Phyllocladus (Coleoptera: Pyrochroidae: Pyro 6 | 8562415 | ACCEPTED | Gonatopus oceanicus (Olmi, 1984) Olmi, 1984 | edcd372f-8928-46ed-add7-6eca8ec4379a | Revision of the Australian species of Gonatopus group 5 (Hymeno 6 | 8564510 | ACCEPTED | Gonatopus maidicolus | df4249ad-d040-4975-9ef0-372918dde698 | Catalogue of the Dryinidae and Sclerogibbidae (Hymenoptera: Chr 6 | 8570161 | ACCEPTED | Cicatricosisporites sinuosus Hunt, 1985 | 31ed99a5-9135-40a2-92a4-64217d9de577 | Barremian palynofloras from the Ashikajima and Kimigahama forma 6 | 8574574 | ACCEPTED | Leucanthemum discoideum Bourg. | 47455795-ddd8-47b1-8310-bc66cc93b534 | Tour d'Horizon floristique sur les alpes françaises 6 | 8583004 | DOUBTFUL | Urospermum picroides (Linnaeus, 1753) Scop | f104b001-83c7-467b-89b1-91ff76779234 | Chapter 7: Linnaean Plant Names and their Types (part T) 6 | 8594466 | DOUBTFUL | Drosera biflora Willdenow | c7e5ebab-96fe-422c-80e3-30997073344d | A synopsis of the genus Drosera (Droseraceae) in Brazil 6 | 8596591 | ACCEPTED | Lasioseisus chenpengi Ma & Yin, 1999 | d51d750d-3374-4f2c-81ff-860b8e592da4 | Catalogue of the mite families Ascidae Voigts & Oudemans, Blatt 6 | 8608877 | ACCEPTED | Gonatopus cantonensis Olmi, 1987 | aea75e24-7003-4c32-b29c-1e0512af5f96 | Dryinidae of the Oriental region (Hymenoptera: Chrysidoidea) 6 | 8612072 | ACCEPTED | Gonatopus dubius (Olmi, 1984) Olmi, 1984 | edcd372f-8928-46ed-add7-6eca8ec4379a | Revision of the Australian species of Gonatopus group 5 (Hymeno 6 | 8612676 | ACCEPTED | Lynchiatilla silvai Casal, 1963 | 2181199a-2f2f-46a1-8a7a-456c1b747fb6 | Lynchiatilla Casal, 1963 (Hymenoptera: Mutillidae): a new speci 6 | 8631406 | HOMOTYPIC_SYNONYM | Pelargonium myrrhifolium (Linnaeus, 1763) Harv. | 94ff507e-8f96-48b3-b3a5-77595fc9be40 | Chapter 7: Linnaean Plant Names and their Types (part G) 6 | 8636390 | ACCEPTED | Gonatopus primitivus (Olmi, 1984) Olmi, 1984 | edcd372f-8928-46ed-add7-6eca8ec4379a | Revision of the Australian species of Gonatopus group 5 (Hymeno 6 | 8649740 | ACCEPTED | Phyllocladus bilobatus Young | df8591ff-8071-4f99-8cb0-d33bc72de107 | Two new species of Phyllocladus (Coleoptera: Pyrochroidae: Pyro 6 | 8673485 | ACCEPTED | Huarpea wagneriella | 673b497b-9fd1-4fd4-b977-5aef559599fa | A new species of Huarpea Pate, 1947 from Colombia and redescrip 6 | 8675992 | ACCEPTED | Protophyllocladoxylon francisiae Pujana, Santillana & Marenssi | 05cafb6c-7551-4d94-a925-f6659d277dcf | Conifer wood assemblage dominated by Podocarpaceae, early Eocen 6 | 8678101 | DOUBTFUL | Iris perrieri Simonnet | 47455795-ddd8-47b1-8310-bc66cc93b534 | Tour d'Horizon floristique sur les alpes françaises 6 | 8689139 | ACCEPTED | Stegosastyrus hemiclara Pyrcz, Boyer & Zacca | 47820b10-9cc7-4824-a27c-261cf9b8ea6c | Stegosatyrus, a new genus of Euptychiina from the grasslands of 6 | 8696248 | ACCEPTED | Gonatopus levis (Olmi, 1991) Olmi, 1991 | edcd372f-8928-46ed-add7-6eca8ec4379a | Revision of the Australian species of Gonatopus group 5 (Hymeno 6 | 8984309 | ACCEPTED | Orchis paellens L., 1771 | 5cfdfc34-912d-4983-b12e-246c56872931 | Orchidaceae, Orchideen 6 | 8936175 | ACCEPTED | Physalis infinemundi Wilf | 285c353d-8675-419a-b12b-8ea887ee64ac | Eocene lantern fruits from Gondwanan Patagonia and the early or 6 | 8933267 | DOUBTFUL | Convolvulus bidentatus Bernh. ex Krauss & Flora | ced00be6-10ee-49b2-9b0b-f553bf7e5904 | A foundation monograph of Convolvulus L. (Convolvulaceae) 6 | 8906633 | ACCEPTED | Sarcodum solomonensis R.Clark & Kew Bull. | 53700efe-1c95-4ea8-ac33-8b9230ca45b4 | The Callerya Group redefined and Tribe Wisterieae (Fabaceae) em 6 | 9185537 | ACCEPTED | Mimosa tweediana Barneby ex Glazier & Mackinder | 42186781-dd9d-418a-ba65-05680906269a | Bolivian Mimosa (Leguminosae, Mimosoideae): three new species a 6 | 8995846 | DOUBTFUL | Chenopodium opulifolium Sehrad. ex W.D.J. | f0bc27d9-feea-4732-bf04-19f030f22cce | Chenopodiaceae - Fumariaceae (Chenopodium) 6 | 7804365 | ACCEPTED | Harrisichara vasiformis | d28ddaf8-3b50-46bb-89a4-0e325e35b705 | Taxonomy and palaeobiogeography of charophytes from the Upper E 6 | 3196111 | ACCEPTED | Ecklonia maxima (Osbeck) Papenf. | 15fc4668-833d-4d5a-a3da-2aea5eb56079 | Chapter 7: Linnaean Plant Names and their Types (part F) 6 | 7489237 | DOUBTFUL | Disella baisensis E.L.Greene, 1906 | 0bd009cc-e25a-422f-a1a3-af04975efb0f | Two new species of Disella (Eriophyidae: Nothopodinae: Nothopod 6 | 7555638 | DOUBTFUL | Disella ilicicola E.L.Greene, 1906 | bcf3c0e7-a1c5-4a8f-a76f-271df4d43c7c | A new eriophyoid mite in the genus Disella from Ilex paraguarie 6 | 7616447 | ACCEPTED | Paracaridilophus retusus | 9885cc5c-37d9-4f1b-8a9d-193d5bbfe953 | Eriophyoid mites from Hainan Province, China III: Descriptions 6 | 7940381 | ACCEPTED | Rhyncadicrus asperulus | 4ee56fc9-c473-4cbe-989c-4c09c6b0772d | New eriophyoid mites (Acari: Prostigmata: Eriophyoidea) from ba 6 | 8080562 | ACCEPTED | Paraisoannulus machiles | 9885cc5c-37d9-4f1b-8a9d-193d5bbfe953 | Eriophyoid mites from Hainan Province, China III: Descriptions 6 | 8185788 | ACCEPTED | Costalimada brasiliensis | 6dc3e25d-0a76-452a-bb98-fd698d89bac9 | Description of a new genus and species of whitefly from Lafoens 6 | 8204086 | ACCEPTED | Arcutelphusa talladega | 834831a3-c0b8-44fa-b357-c14c05822909 | Revision of Holarctic Teleiodini (Lepidoptera: Gelechiidae) 6 | 8259752 | ACCEPTED | Inti levis | 30f81899-eaf5-4e2a-bcd7-589a1000655b | Inti (Hymenoptera: Eulophidae) a peculiar new genus from tropic 6 | 8413628 | ACCEPTED | Calliparus lanceolarus | 54cebc7b-6d7c-407b-8d0b-d4f7e6d59d13 | A new genus and three new species of Nothopodinae (Acari: Eriop 6 | 8460461 | ACCEPTED | Hellerenius plumipes | 16d0cbc8-dd2c-4a41-8ab3-4649778bcee0 | The Apionidae (Coleoptera: Curculionoidea) of New Caledonia. Ge 6 | 8463986 | ACCEPTED | Xerophytavorus rastrullus | b26385a2-dd9e-4b8f-b69f-887704118db6 | New leafhopper genera and species (Hemiptera: Cicadellidae) whi (100 rows)

mdoering commented 1 year ago

All names per backbone kingdom:

mdoering commented 1 year ago

Another example: https://www.gbif.org/species/search?dataset_key=16d0cbc8-dd2c-4a41-8ab3-4649778bcee0&highertaxon_key=205996213&origin=SOURCE&advanced=1