plazi / ggxml2taxpub

Conversion of GoldenGATE XML to JATS/TaxPub at treatment level
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add treatment DOI instead of article DOI for the treatment #71

Open myrmoteras opened 8 months ago

myrmoteras commented 8 months ago

@tcatapano in biodiversityPMC a linkout is introduced (see here image

https://sibils.text-analytics.ch/search/collections/plazi/03B3990EC5234645FF2CF9F8FD68FE9C

to operate, we need to provide the treatment doi.

https://github.com/sibils/community/files/14064090/03B3990EC5234645FF2CF9F8FD68FE9C.zip

currently we add in the <uri content-type="zenodo-doi">10.11646/zootaxa.5397.4.1</uri> the article doi which in fact should be the treatment doi.

the article doi is provided afterwards <pub-id pub-id-type="doi">10.11646/zootaxa.5397.4.1</pub-id>

<uri content-type="zenodo-doi">10.11646/zootaxa.5397.4.1</uri>
<uri content-type="treatment-bank-uri">http://treatment.plazi.org/id/03B3990EC5234645FF2CF9F8FD68FE9C</uri>
<article-title>Unexpected diversity and co-occurrence of phytotelmic frogs (Guibemantis) around Andasibe, one of the most intensively surveyed amphibian hotspots of Madagascar, and descriptions of three new species</article-title>
<pub-id pub-id-type="doi">10.11646/zootaxa.5397.4.1</pub-id>
gsautter commented 8 months ago

Just as a hint, the treatment DOI is in the ID-DOI attribute of the treatment element.

myrmoteras commented 8 months ago

can you point this out in the metadata=

<mixed-citation>
<named-content content-type="treatment-title">Guibemantis ambakoana Gabriel &amp; Rothe &amp; Köhler &amp; Rakotomanga &amp; Edmonds &amp; Galán &amp; Glaw &amp; Lehtinen &amp; Rakotoarison &amp; Vences 2024, sp. nov.</named-content>
<uri content-type="zenodo-doi">10.11646/zootaxa.5397.4.1</uri>
<uri content-type="treatment-bank-uri">http://treatment.plazi.org/id/03B3990EC5234645FF2CF9F8FD68FE9C</uri>
<article-title>Unexpected diversity and co-occurrence of phytotelmic frogs (Guibemantis) around Andasibe, one of the most intensively surveyed amphibian hotspots of Madagascar, and descriptions of three new species</article-title>
<pub-id pub-id-type="doi">10.11646/zootaxa.5397.4.1</pub-id>
<issn>1175-5326</issn>
<source>Zootaxa</source>
</mixed-citation>