Fix Bug? in FindCellsToCheck causing return of NAs in unassigned_cells and causes errors downstream

plevritis-lab / CELESTA

Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information for multiplexed in situ imaging data. No training dataset with cell type labels is required.

Apache License 2.0

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Fix Bug? in FindCellsToCheck causing return of NAs in unassigned_cells and causes errors downstream #11

Closed andrewjUTSW closed 1 year ago

andrewjUTSW commented 2 years ago

adding unique() , similar to what is done in with FindCellsWithId

Otherwise causes errors during CalculateScores

weiruo16 commented 2 years ago

For this error, may I ask whether you have run any cell filtering?

weiruo16 commented 2 years ago

We did fix some issue with the unassigned cells. Please try the new main branch.

andrewjUTSW commented 2 years ago

Thank you, I will get it a try soon, and keep you updated!