Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information for multiplexed in situ imaging data. No training dataset with cell type labels is required.
Modifications made: (1) Adding a warning for sample with extremely low number of cells
(2) Modified the plotting function to automatically eliminate cells that are not identified
(3) Fixed the bug related to apply( ) function used related to unassigned cells
(4) Fixed the bug related to the bandwidth parameter
Modifications made: (1) Adding a warning for sample with extremely low number of cells (2) Modified the plotting function to automatically eliminate cells that are not identified (3) Fixed the bug related to apply( ) function used related to unassigned cells (4) Fixed the bug related to the bandwidth parameter