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plger
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scDblFinder
Methods for detecting doublets in single-cell sequencing data
https://plger.github.io/scDblFinder/
GNU General Public License v3.0
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Running scDblFinder deterministic and serial with the 'samples' parameter
#59
cwoehle
closed
2 years ago
3
V minor coding bug with multiSampleMode = 'split' and returnType = 'table'
#58
wmacnair
closed
2 years ago
0
Possible Bug: cxds2 call does not include artificial doublets in whichDbls
#57
alexvpickering
closed
2 years ago
1
why error ?
#56
kdyoung100
closed
2 years ago
4
size factors should be positive in computeDoubletDensity
#55
Close-your-eyes
closed
2 years ago
1
xcgboost install
#54
bjstewart1
closed
2 years ago
2
scDblFinder not deterministic when using batch+BPPARAM
#53
ATpoint
closed
2 years ago
9
Exploring Overrepresented Doublets
#52
cohenp05
closed
2 years ago
3
Issue running scDblFinder on scATAC-seq data
#51
debbie28
closed
2 years ago
3
BiocParallel error - could not find symbol 'useNames' in environment of the generic function
#50
dpcook
closed
2 years ago
2
Forgot to import sweep from DelayedArray
#49
LTLA
closed
2 years ago
3
Feats4bm
#48
plger
closed
3 years ago
0
Feats4bm
#47
plger
closed
3 years ago
0
Dimension reduction option
#46
bjstewart1
closed
3 years ago
2
Issue with knownDoublets
#45
bjstewart1
closed
3 years ago
3
No mbkmeans requirement + fixed doc params
#44
plger
closed
3 years ago
0
Using both scATAC and scGEX combined from 10x Multiome for doublet calling
#43
eliascrapa
closed
3 years ago
2
Update scDblFinder.R
#42
federicomarini
closed
3 years ago
0
Error in sample.int(length(x), size, replace, prob)
#41
GabyBG
closed
3 years ago
2
Pre-filter the count matrix before scDblFinder?
#40
merckey
closed
3 years ago
2
Merge data or individual data
#39
ysu2015
closed
3 years ago
2
Batch mode with BPPARAM=MulticoreParam() not working
#38
JTpath
closed
3 years ago
15
Error in ecdf(d$cxds_score[w]) : 'x' must have 1 or more non-missing values
#37
lindsaynhayes
closed
3 years ago
9
fixed some warnings in devel check
#36
plger
closed
3 years ago
0
Installing fails as requires R 4.1.0
#35
JTpath
closed
3 years ago
2
added feature aggregation for scATAC
#34
plger
closed
3 years ago
0
Multi sample mode
#33
plger
closed
3 years ago
0
Size factors should be positive
#32
Yale73
closed
3 years ago
6
Error with empty factor levels
#31
ATpoint
closed
3 years ago
2
"griffiths" threshold measure should not be per-cluster
#30
jonathangriffiths
closed
3 years ago
5
Refer to the right internal function in tests.
#29
LTLA
closed
3 years ago
0
Note to self: figure out why computeDoubletDensity is unhappy on R-devel
#28
LTLA
closed
3 years ago
2
rowMeans Error
#27
drneavin
closed
3 years ago
5
Miscellaneous clustering observations
#26
LTLA
closed
3 years ago
8
probs outside [0,1] when training model
#25
drhochbaum
closed
3 years ago
2
port changes from devel
#24
plger
closed
3 years ago
0
rbind error when running multiple samples
#23
drhochbaum
closed
3 years ago
2
port master to devel
#22
plger
closed
3 years ago
0
scDblFinder.class no longer added to SCE output
#21
j-andrews7
closed
3 years ago
2
Fixed computeDoubletDensity.
#20
LTLA
closed
3 years ago
0
Assorted fixes to vignettes
#19
LTLA
closed
3 years ago
0
Actually added the vignette for recoverDoublets theory.
#18
LTLA
closed
4 years ago
0
Devel
#17
plger
closed
4 years ago
0
Migrate doubletCells as computeDoubletDensity
#16
LTLA
closed
4 years ago
0
port LTLA's pushes to devel
#15
plger
closed
4 years ago
0
fixed bug on special return
#14
plger
closed
4 years ago
0
Round 2: doubletCluster
#13
LTLA
closed
4 years ago
0
Devel
#12
plger
closed
4 years ago
0
Merge pull request #10 from plger/master
#11
plger
closed
4 years ago
0
porting LTLA's changes to devel branch
#10
plger
closed
4 years ago
0
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