plinder-org / plinder

Protein Ligand INteraction Dataset and Evaluation Resource
https://plinder.sh
Apache License 2.0
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feat: change system and interaction definition #17

Closed Ninjani closed 3 months ago

Ninjani commented 3 months ago

Change system definition to not rely on PLIP - (1) systems are defined by neighboring_protein_chains, and (2) artifacts are always set to have no interactions and hence not saved unless part of a holo or ion system.

github-actions[bot] commented 3 months ago

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FileStatementsMissingCoverageCoverage
(new stmts)
Lines missing
  src/plinder/core
  __init__.py
  src/plinder/data
  __init__.py
  get_system_annotations.py
  splits.py
  src/plinder/data/pipeline
  config.py
  io.py
  utils.py
  src/plinder/data/utils/annotations
  aggregate_annotations.py 216-217
  get_ligand_validation.py
  interaction_utils.py
  ligand_utils.py
  rdkit_utils.py
  save_utils.py
  src/plinder/eval/docking
  utils.py
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