plinder-org / plinder

Protein Ligand INteraction Dataset and Evaluation Resource
https://plinder.sh
Apache License 2.0
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Update splitting #28

Closed tjduigna closed 3 months ago

tjduigna commented 3 months ago

This PR contains outstanding changes to the splitting code, on which gs://plinder/2024-06/v2/splits/split.parquet is dependent. Here is an all-too-abbreviated summary of the included changes:

github-actions[bot] commented 3 months ago

Coverage report

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FileStatementsMissingCoverageCoverage
(new stmts)
Lines missing
  src/plinder/core/index
  utils.py
  src/plinder/core/scores
  clusters.py
  query.py
  src/plinder/core/split
  plot.py 17-18, 38, 44-56, 155, 157, 170, 175, 188-204, 257-260, 294-312, 328-329, 378-396, 399-430, 433-475, 478-605, 608-616, 627-628, 631-662, 665-712, 715-757, 764, 766-768, 771-775, 779-822, 834
  utils.py 181-182
  src/plinder/data
  clusters.py 194-231, 273, 331-368, 379
  smallmolecules.py 152-156, 163-166
  splits.py 245-307, 324-333, 428-433, 564, 574-582, 599-613, 655-744, 751-866, 889-894, 903-905, 917-920, 962
  src/plinder/data/utils/annotations
  aggregate_annotations.py
  ligand_utils.py
  src/plinder/eval/docking
  stratify_test_set.py 10-14, 35, 63-64, 73-110, 173, 184, 224-247, 282-298
Project Total  

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