Add split to query_index

[Ninjani]

• Adds splits option to query_index
  • Sets it to ["train", "val"] by default
  • Can use ["*"] to get everything
• Adds multi_query_protein_similarity for single system search which does an AND of a set of metrics and thresholds (as used for linking apo/pred)

[github-actions[bot]]

Coverage report

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File	Statements	Missing	Coverage	Coverage (new stmts)	Lines missing
src/plinder/core/index
utils.py
src/plinder/core/scores
index.py					43, 53, 58
protein.py					160, 170, 173, 190
query.py
src/plinder/core/split
utils.py
src/plinder/core/system
system.py					282-299
src/plinder/core/utils
cpl.py
gcs.py
io.py					57-58, 67-81
unpack.py
src/plinder/data
databases.py
docs.py
final_structure_qc.py
get_system_annotations.py
save_linked_structures.py
src/plinder/data/pipeline
config.py
io.py
src/plinder/data/utils
diffdock_utils.py
src/plinder/data/utils/annotations
aggregate_annotations.py
ligand_utils.py
protein_utils.py
src/plinder/eval/docking
make_plots.py
stratify_test_set.py
utils.py
write_scores.py					130-153
Project Total

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