plinder-org / plinder

Protein Ligand INteraction Dataset and Evaluation Resource
https://plinder.sh
Apache License 2.0
166 stars 9 forks source link

about the local plinder dir #67

Closed Getiann closed 1 month ago

Getiann commented 1 month ago

I want to try python API. I followed the steps in the python API tutorial. screenshot-20240927-155348 In this step, an error has occurred.

ValueError: '/home_data/home/my/path/.local/share/plinder/2024-06/v2/entries/ag.zip' is not in the subpath of '/home_data/home/my/path/.local/share/plinder/2024-06/tutorial' OR one path is relative and the other is absolute.

How should I to fix it! Thanks

OleinikovasV commented 1 month ago

Hi, @Getiann, Seems like you may have an issue with mixed specifications of your config - you should be working with a tutorial subset, but it seems like you are pointing to a v2 iteration directory. Is it possible that you have changed some of these configs from those that were originally specified in the documentation? Try reseting your notebook back to original version.

If that does not work, could you please provide the output for these commands:

import plinder.core.utils.config
cfg = plinder.core.get_config()

print(f"local cache directory: {cfg.data.plinder_dir}")
print(f"remote data directory: {cfg.data.plinder_remote}")
print(f"release: {cfg.data.plinder_release}")
print(f"iteration: {cfg.data.plinder_iteration}")

print(f"version: {plinder.__version__}")
Getiann commented 1 month ago

Thank you, @OleinikovasV The problem is solved! My remote data directory is wrong. image It's my carelessness.