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plotly / dash-bio

Open-source bioinformatics components for Dash
https://dash-gallery.plotly.host/Portal/?search=Bioinformatics
MIT License
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Sample app comparing 3 different molecule renderers and their visualization parameters #559

Open jackparmer opened 3 years ago

jackparmer commented 3 years ago

We now have 3 different 3d molecule renderers in Dash Bio (Speck, 3dmol, and NGL). It would be nice to have a playground app where you could easily compare these 3 different renderers and customize + export the visualization. The PDB files from this DeepMind paper would be fun sample data: https://deepmind.com/research/open-source/computational-predictions-of-protein-structures-associated-with-COVID-19

This app is a good example of showing the available visualization parameters for a given renderer:

(From https://blog.reverielabs.com/building-web-applications-from-python-scripts-with-streamlit/)

jackparmer commented 3 years ago

Another good example: https://twitter.com/napoles3D/status/1427324902197977088

jackparmer commented 3 years ago

Worth exploring https://github.com/plotly/dash-bio/issues/511 at the same time