hello there,
I have encountered the Error : TypeError: init() got an unexpected keyword argument 'log_level' , while trying to analyse some NanoPore seq data.
i have implemented the steps presented in this thread , https://github.com/pltrdy/files2rouge/issues/7 .
i have pyrouge 0.1.3 and ROUGE-1.5.5 is configured properly.
i am using this syntax in python 3 :
db = SampCompDB ( db_fn = "/media/shiberlab/My Passport/Analysis-MM/nanopolish/Analysis-MM/nanopolish/18.10.2022/outSampComp.db",fasta_fn = "/media/shiberlab/My Passport/Analysis-MM/nanopolish/GCF_000146045.2_R64_rna.fa",log_level="warning")
LibertFan
commented
1 year ago
hello there, I have encountered the Error : TypeError: init() got an unexpected keyword argument 'log_level' , while trying to analyse some NanoPore seq data. i have implemented the steps presented in this thread , https://github.com/pltrdy/files2rouge/issues/7 . i have pyrouge 0.1.3 and ROUGE-1.5.5 is configured properly.
i am using this syntax in python 3 :
db = SampCompDB ( db_fn = "/media/shiberlab/My Passport/Analysis-MM/nanopolish/Analysis-MM/nanopolish/18.10.2022/outSampComp.db",fasta_fn = "/media/shiberlab/My Passport/Analysis-MM/nanopolish/GCF_000146045.2_R64_rna.fa",log_level="warning")
any ideas ?