Updating QE patches for v2.8

[Iximiel]

Description

I git checkout upstream/master qespresso-*.diffed the patches into the v2.8 I also aligned the 5.0.2 patch to the newer ones, with the correct passage of the masses. (i set up the tests to be launched here https://github.com/plumed/test-plumed-qe/pull/6)

Target release

I would like my code to appear in release v2.8++ I think the patch can be merged as is in the newer branches, If it cannot be fast-forwarded PM and I set up the pr for the 2.9

Type of contribution

• [X] changes to code or doc authored by PLUMED developers, or additions of code in the core or within the default modules
• [ ] changes to a module not authored by you
• [ ] new module contribution or edit of a module authored by you

Copyright

• [x] I agree to transfer the copyright of the code I have written to the PLUMED developers or to the author of the code I am modifying.

• [ ] the module I added or modified contains a COPYRIGHT file with the correct license information. Code should be released under an open source license. I also used the command cd src && ./header.sh mymodulename in order to make sure the headers of the module are correct.

Tests

• [ ] I added a new regtest or modified an existing regtest to validate my changes.
• [ ] I verified that all regtests are passed successfully on GitHub Actions.

[GiovanniBussi]

Thanks @Iximiel ! Indeed I cannot merge to v2.9 (there are conflicts...) can you double check?

[Iximiel]

@GiovanniBussi you'll se a PR in a few minutes