Mocha tests for julia v0.5

pnth commented 7 years ago

Julia v0.5 was release 2 days ago. Could you please run tests for this version.

mcreel commented 7 years ago

I have found that some of my own code that uses Mocha will not run with julia 0.5. To try to figure out what's going on, I tried the tests. Some tests fail, too. I'm appending the results I get. I'm happy to help out in any way I can.

michael@yosemite:~$ julia
               _
   _       _ _(_)_     |  A fresh approach to technical computing
  (_)     | (_) (_)    |  Documentation: http://docs.julialang.org
   _ _   _| |_  __ _   |  Type "?help" for help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 0.5.1-pre+2 (2016-09-20 03:34 UTC)
 _/ |\__'_|_|_|\__'_|  |  Commit f0d40ec* (8 days old release-0.5)
|__/                   |  x86_64-linux-gnu

julia> Pkg.test("Mocha")
INFO: Testing Mocha
WARNING: Method definition info(Any...) in module Base at util.jl:320 overwritten in module Logging at /home/michael/.julia/v0.5/Logging/src/Logging.jl:61.
WARNING: Method definition warn(Any...) in module Base at util.jl:350 overwritten in module Logging at /home/michael/.julia/v0.5/Logging/src/Logging.jl:61.
Configuring Mocha...
 * CUDA       disabled by default
 * Native Ext disabled by default
Mocha configured, continue loading module...
DefaultBackend = Mocha.CPUBackend
WARNING: Method definition setup(Mocha.Backend, Mocha.Layer, Any, Array{Mocha.Blob, 1}, Array{Mocha.Blob, 1}) in module Mocha at /home/michael/.julia/v0.5/Mocha/src/layers.jl:107 overwritten at /home/michael/.julia/v0.5/Mocha/src/layers.jl:112.
WARNING: Method definition update(Mocha.Solver{Mocha.SGD}, Mocha.Net, Mocha.SolverState{Mocha.SGDSolverState}) in module Mocha at /home/michael/.julia/v0.5/Mocha/src/solvers/sgd.jl:69 overwritten at /home/michael/.julia/v0.5/Mocha/src/solvers/nesterov.jl:16.
WARNING: using Mocha.setup in module Main conflicts with an existing identifier.
-- Testing simple Adam solver call
28-Sep 09:02:56:INFO:root:Constructing net TEST on Mocha.CPUBackend...
28-Sep 09:02:56:INFO:root:Topological sorting 4 layers...
28-Sep 09:02:56:INFO:root:Setup layers...
28-Sep 09:02:57:INFO:root:Network constructed!
28-Sep 09:02:57:DEBUG:root:#DEBUG Checking network topology for back-propagation
28-Sep 09:02:58:DEBUG:root:Init network TEST
28-Sep 09:02:58:DEBUG:root:Init parameter weight for layer ip1
28-Sep 09:02:58:DEBUG:root:Init parameter bias for layer ip1
28-Sep 09:02:58:DEBUG:root:Init parameter weight for layer ip2
28-Sep 09:02:58:DEBUG:root:Init parameter bias for layer ip2
28-Sep 09:02:58:DEBUG:root:#DEBUG Initializing coffee breaks
28-Sep 09:02:58:DEBUG:root:#DEBUG Entering solver loop
28-Sep 09:02:59:DEBUG:root:Destroying network TEST
-- Testing simple SGD solver call
28-Sep 09:02:59:INFO:root:Constructing net TEST on Mocha.CPUBackend...
28-Sep 09:02:59:INFO:root:Topological sorting 4 layers...
28-Sep 09:02:59:INFO:root:Setup layers...
28-Sep 09:02:59:INFO:root:Network constructed!
28-Sep 09:02:59:DEBUG:root:#DEBUG Checking network topology for back-propagation
28-Sep 09:02:59:DEBUG:root:Init network TEST
28-Sep 09:02:59:DEBUG:root:Init parameter weight for layer ip1
28-Sep 09:02:59:DEBUG:root:Init parameter bias for layer ip1
28-Sep 09:02:59:DEBUG:root:Init parameter weight for layer ip2
28-Sep 09:02:59:DEBUG:root:Init parameter bias for layer ip2
28-Sep 09:02:59:DEBUG:root:#DEBUG Initializing coffee breaks
28-Sep 09:02:59:DEBUG:root:#DEBUG Entering solver loop
28-Sep 09:02:59:DEBUG:root:Destroying network TEST
-- Testing network topology with duplicated blobs
28-Sep 09:03:00:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:00:INFO:root:Topological sorting 1 layers...
28-Sep 09:03:00:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:00:INFO:root:Topological sorting 2 layers...
-- Testing network topology with missing blobs
28-Sep 09:03:00:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:00:INFO:root:Topological sorting 1 layers...
-- Testing network topology with circular dependency
28-Sep 09:03:00:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:00:INFO:root:Topological sorting 2 layers...
-- Testing network topology with multiple back-propagate path
    > Good blob sharing
28-Sep 09:03:00:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:00:INFO:root:Topological sorting 5 layers...
28-Sep 09:03:00:INFO:root:Setup layers...
28-Sep 09:03:01:INFO:root:Network constructed!
28-Sep 09:03:01:DEBUG:root:Destroying network net
    > Bad blob sharing
28-Sep 09:03:01:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:01:INFO:root:Topological sorting 6 layers...
28-Sep 09:03:01:INFO:root:Setup layers...
28-Sep 09:03:01:INFO:root:Network constructed!
-- Testing network topology with dangling blob
    > Good case
28-Sep 09:03:01:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:01:INFO:root:Topological sorting 4 layers...
28-Sep 09:03:01:INFO:root:Setup layers...
28-Sep 09:03:01:INFO:root:Network constructed!
28-Sep 09:03:01:DEBUG:root:Destroying network net
    > Bad case
28-Sep 09:03:01:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:01:INFO:root:Topological sorting 4 layers...
28-Sep 09:03:01:INFO:root:Setup layers...
28-Sep 09:03:01:INFO:root:Network constructed!
28-Sep 09:03:01:DEBUG:root:Destroying network net
    > Good case 2
28-Sep 09:03:01:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:01:INFO:root:Topological sorting 5 layers...
28-Sep 09:03:01:INFO:root:Setup layers...
28-Sep 09:03:01:INFO:root:Network constructed!
28-Sep 09:03:01:DEBUG:root:Destroying network net
    > Bad case 2
28-Sep 09:03:01:INFO:root:Constructing net net on Mocha.CPUBackend...
28-Sep 09:03:01:INFO:root:Topological sorting 6 layers...
28-Sep 09:03:01:INFO:root:Setup layers...
28-Sep 09:03:01:INFO:root:Network constructed!
28-Sep 09:03:01:DEBUG:root:Destroying network net
-- Testing gradients on simple network (example for gradient checking code)
28-Sep 09:03:01:INFO:root:Constructing net TEST on Mocha.CPUBackend...
28-Sep 09:03:01:INFO:root:Topological sorting 4 layers...
28-Sep 09:03:01:INFO:root:Setup layers...
28-Sep 09:03:01:INFO:root:Network constructed!
-- Testing simple reference counting...
-- Testing glob Utilities
-- Testing RawBLAS{Float32} Utilities
-- Testing RawBLAS{Float64} Utilities
-- Testing blob reshape on Mocha.CPUBackend{Float32}...
-- Testing blob reshape on Mocha.CPUBackend{Float64}...
-- Testing ReLU neuron on Mocha.CPUBackend{Float32}...
    > Forward
    > Backward
-- Testing ReLU neuron on Mocha.CPUBackend{Float64}...
    > Forward
    > Backward
-- Testing Sigmoid neuron on Mocha.CPUBackend{Float32}...
    > Forward
    > Backward
-- Testing Sigmoid neuron on Mocha.CPUBackend{Float64}...
    > Forward
    > Backward
-- Testing Tanh neuron on Mocha.CPUBackend{Float32}...
    > Forward
    > Backward
-- Testing Tanh neuron on Mocha.CPUBackend{Float64}...
    > Forward
    > Backward
-- Testing Exponential neuron on Mocha.CPUBackend{Float32}...
    > Forward
    > Backward
-- Testing Exponential neuron on Mocha.CPUBackend{Float64}...
    > Forward
    > Backward
-- Testing L2 regularizer on Mocha.CPUBackend{Float32}...
-- Testing L2 regularizer on Mocha.CPUBackend{Float64}...
-- Testing L1 regularizer on Mocha.CPUBackend{Float32}...
WARNING: could not attach metadata for @simd loop.
-- Testing L1 regularizer on Mocha.CPUBackend{Float64}...
WARNING: could not attach metadata for @simd loop.
-- Testing L2 constraint on Mocha.CPUBackend{Float32}...
-- Testing L2 constraint on Mocha.CPUBackend{Float64}...
-- Testing DataTransformers on Mocha.CPUBackend{Float32}...
    > SubMean
ERROR: LoadError: LoadError: MethodError: no method matching setup(::Mocha.CPUBackend, ::Mocha.DataTransformers.SubMean, ::Mocha.CPUBlob{Float32,4})
 in test_data_transformer(::Mocha.CPUBackend, ::Type{T}, ::Float64) at /home/michael/.julia/v0.5/Mocha/test/data-transformers.jl:11
 in test_data_transformer(::Mocha.CPUBackend) at /home/michael/.julia/v0.5/Mocha/test/data-transformers.jl:34
 in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
 in process_options(::Base.JLOptions) at ./client.jl:262
 in _start() at ./client.jl:318
while loading /home/michael/.julia/v0.5/Mocha/test/data-transformers.jl, in expression starting on line 39
while loading /home/michael/.julia/v0.5/Mocha/test/runtests.jl, in expression starting on line 79
=======================================================================[ ERROR: Mocha ]========================================================================

failed process: Process(`/home/michael/julia/usr/bin/julia -Cnative -J/home/michael/julia/usr/lib/julia/sys.so --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes /home/michael/.julia/v0.5/Mocha/test/runtests.jl`, ProcessExited(1)) [1]

===============================================================================================================================================================
------ PkgError ------------------------ Stacktrace (most recent call last)

 [1] — test(::String, ::Vararg{String,N}) at pkg.jl:258

 [2] — #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at pkg.jl:258

 [3] — (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at <missing>:0

 [4] — #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at dir.jl:31

 [5] — cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at file.jl:59

 [6] — (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at dir.jl:31

 [7] — (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at <missing>:0

 [8] — #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at entry.jl:740

Mocha had test errors

julia>

pluskid commented 7 years ago

I fixed some compatibility issue in the master. Could you guys see if it fixed your issue?

mcreel commented 7 years ago

After checking out from master, the tests still have problems, the result I obtain is below. This is the same as before, I believe.

julia> Pkg.test("Mocha")
INFO: Testing Mocha
WARNING: Method definition info(Any...) in module Base at util.jl:320 overwritten in module Logging at /home/michael/.julia/v0.5/Logging/src/Logging.jl:61.
WARNING: Method definition warn(Any...) in module Base at util.jl:350 overwritten in module Logging at /home/michael/.julia/v0.5/Logging/src/Logging.jl:61.
Configuring Mocha...
 * CUDA       disabled by default
 * Native Ext disabled by default
Mocha configured, continue loading module...
DefaultBackend = Mocha.CPUBackend
WARNING: using Mocha.setup in module Main conflicts with an existing identifier.
-- Testing simple Adam solver call
29-Sep 06:53:49:INFO:root:Constructing net TEST on Mocha.CPUBackend...
29-Sep 06:53:49:INFO:root:Topological sorting 4 layers...
29-Sep 06:53:49:INFO:root:Setup layers...
29-Sep 06:53:50:INFO:root:Network constructed!
29-Sep 06:53:50:DEBUG:root:#DEBUG Checking network topology for back-propagation
29-Sep 06:53:52:DEBUG:root:Init network TEST
29-Sep 06:53:52:DEBUG:root:Init parameter weight for layer ip1
29-Sep 06:53:52:DEBUG:root:Init parameter bias for layer ip1
29-Sep 06:53:52:DEBUG:root:Init parameter weight for layer ip2
29-Sep 06:53:52:DEBUG:root:Init parameter bias for layer ip2
29-Sep 06:53:52:DEBUG:root:#DEBUG Initializing coffee breaks
29-Sep 06:53:53:DEBUG:root:#DEBUG Entering solver loop
29-Sep 06:53:53:DEBUG:root:Destroying network TEST
-- Testing simple SGD solver call
29-Sep 06:53:54:INFO:root:Constructing net TEST on Mocha.CPUBackend...
29-Sep 06:53:54:INFO:root:Topological sorting 4 layers...
29-Sep 06:53:54:INFO:root:Setup layers...
29-Sep 06:53:54:INFO:root:Network constructed!
29-Sep 06:53:54:DEBUG:root:#DEBUG Checking network topology for back-propagation
29-Sep 06:53:54:DEBUG:root:Init network TEST
29-Sep 06:53:54:DEBUG:root:Init parameter weight for layer ip1
29-Sep 06:53:54:DEBUG:root:Init parameter bias for layer ip1
29-Sep 06:53:54:DEBUG:root:Init parameter weight for layer ip2
29-Sep 06:53:54:DEBUG:root:Init parameter bias for layer ip2
29-Sep 06:53:54:DEBUG:root:#DEBUG Initializing coffee breaks
29-Sep 06:53:54:DEBUG:root:#DEBUG Entering solver loop
29-Sep 06:53:54:DEBUG:root:Destroying network TEST
-- Testing network topology with duplicated blobs
29-Sep 06:53:55:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:55:INFO:root:Topological sorting 1 layers...
29-Sep 06:53:55:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:55:INFO:root:Topological sorting 2 layers...
-- Testing network topology with missing blobs
29-Sep 06:53:55:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:55:INFO:root:Topological sorting 1 layers...
-- Testing network topology with circular dependency
29-Sep 06:53:55:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:55:INFO:root:Topological sorting 2 layers...
-- Testing network topology with multiple back-propagate path
    > Good blob sharing
29-Sep 06:53:55:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:55:INFO:root:Topological sorting 5 layers...
29-Sep 06:53:55:INFO:root:Setup layers...
29-Sep 06:53:56:INFO:root:Network constructed!
29-Sep 06:53:56:DEBUG:root:Destroying network net
    > Bad blob sharing
29-Sep 06:53:56:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:56:INFO:root:Topological sorting 6 layers...
29-Sep 06:53:56:INFO:root:Setup layers...
29-Sep 06:53:56:INFO:root:Network constructed!
-- Testing network topology with dangling blob
    > Good case
29-Sep 06:53:56:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:56:INFO:root:Topological sorting 4 layers...
29-Sep 06:53:56:INFO:root:Setup layers...
29-Sep 06:53:57:INFO:root:Network constructed!
29-Sep 06:53:57:DEBUG:root:Destroying network net
    > Bad case
29-Sep 06:53:57:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:57:INFO:root:Topological sorting 4 layers...
29-Sep 06:53:57:INFO:root:Setup layers...
29-Sep 06:53:57:INFO:root:Network constructed!
29-Sep 06:53:57:DEBUG:root:Destroying network net
    > Good case 2
29-Sep 06:53:57:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:57:INFO:root:Topological sorting 5 layers...
29-Sep 06:53:57:INFO:root:Setup layers...
29-Sep 06:53:57:INFO:root:Network constructed!
29-Sep 06:53:57:DEBUG:root:Destroying network net
    > Bad case 2
29-Sep 06:53:57:INFO:root:Constructing net net on Mocha.CPUBackend...
29-Sep 06:53:57:INFO:root:Topological sorting 6 layers...
29-Sep 06:53:57:INFO:root:Setup layers...
29-Sep 06:53:57:INFO:root:Network constructed!
29-Sep 06:53:57:DEBUG:root:Destroying network net
-- Testing gradients on simple network (example for gradient checking code)
29-Sep 06:53:57:INFO:root:Constructing net TEST on Mocha.CPUBackend...
29-Sep 06:53:57:INFO:root:Topological sorting 4 layers...
29-Sep 06:53:57:INFO:root:Setup layers...
29-Sep 06:53:57:INFO:root:Network constructed!
-- Testing simple reference counting...
-- Testing glob Utilities
-- Testing RawBLAS{Float32} Utilities
-- Testing RawBLAS{Float64} Utilities
-- Testing blob reshape on Mocha.CPUBackend{Float32}...
-- Testing blob reshape on Mocha.CPUBackend{Float64}...
-- Testing ReLU neuron on Mocha.CPUBackend{Float32}...
    > Forward
    > Backward
-- Testing ReLU neuron on Mocha.CPUBackend{Float64}...
    > Forward
    > Backward
-- Testing Sigmoid neuron on Mocha.CPUBackend{Float32}...
    > Forward
    > Backward
-- Testing Sigmoid neuron on Mocha.CPUBackend{Float64}...
    > Forward
    > Backward
-- Testing Tanh neuron on Mocha.CPUBackend{Float32}...
    > Forward
    > Backward
-- Testing Tanh neuron on Mocha.CPUBackend{Float64}...
    > Forward
    > Backward
-- Testing Exponential neuron on Mocha.CPUBackend{Float32}...
    > Forward
    > Backward
-- Testing Exponential neuron on Mocha.CPUBackend{Float64}...
    > Forward
    > Backward
-- Testing L2 regularizer on Mocha.CPUBackend{Float32}...
-- Testing L2 regularizer on Mocha.CPUBackend{Float64}...
-- Testing L1 regularizer on Mocha.CPUBackend{Float32}...
WARNING: could not attach metadata for @simd loop.
-- Testing L1 regularizer on Mocha.CPUBackend{Float64}...
WARNING: could not attach metadata for @simd loop.
-- Testing L2 constraint on Mocha.CPUBackend{Float32}...
-- Testing L2 constraint on Mocha.CPUBackend{Float64}...
-- Testing DataTransformers on Mocha.CPUBackend{Float32}...
    > SubMean
ERROR: LoadError: LoadError: MethodError: no method matching setup(::Mocha.CPUBackend, ::Mocha.DataTransformers.SubMean, ::Mocha.CPUBlob{Float32,4})
 in test_data_transformer(::Mocha.CPUBackend, ::Type{T}, ::Float64) at /home/michael/.julia/v0.5/Mocha/test/data-transformers.jl:11
 in test_data_transformer(::Mocha.CPUBackend) at /home/michael/.julia/v0.5/Mocha/test/data-transformers.jl:34
 in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
 in process_options(::Base.JLOptions) at ./client.jl:262
 in _start() at ./client.jl:318
while loading /home/michael/.julia/v0.5/Mocha/test/data-transformers.jl, in expression starting on line 39
while loading /home/michael/.julia/v0.5/Mocha/test/runtests.jl, in expression starting on line 79
========================================[ ERROR: Mocha ]=========================================

failed process: Process(`/home/michael/julia/usr/bin/julia -Cnative -J/home/michael/julia/usr/lib/julia/sys.so --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes /home/michael/.julia/v0.5/Mocha/test/runtests.jl`, ProcessExited(1)) [1]

=================================================================================================
------ PkgError ------------------------ Stacktrace (most recent call last)

 [1] — test(::String, ::Vararg{String,N}) at pkg.jl:258

 [2] — #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at pkg.jl:258

 [3] — (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at <missing>:0

 [4] — #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at dir.jl:31

 [5] — cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at file.jl:59

 [6] — (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at dir.jl:31

 [7] — (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at <missing>:0

 [8] — #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at entry.jl:740

Mocha had test errors

julia>

pluskid commented 7 years ago

What version of Julia and what OS are you using? I tested on Ubuntu and Julia v0.5 release, everything works fine for me.

mcreel commented 7 years ago

It's julia Version 0.5.1-pre+2 (2016-09-20 03:34 UTC) on Debian testing. If the tests run fine on Ubuntu, then I'll have to check my julia installation. I just did a git checkout and built from source, the way I have always done with older versions.

mcreel commented 7 years ago

I get the same error as reported above using the generic 64 bit binaries from http://julialang.org/downloads/

pluskid commented 7 years ago

@mcreel Can you test a stable release (I'm using v0.5.0) instead of testing version like 0.5.1-pre+2?

mcreel commented 7 years ago

The binaries from julialang.org are the 0.5.0 release. Here's the complete version information: julia> versioninfo() Julia Version 0.5.0 Commit 3c9d753 (2016-09-19 18:14 UTC) Platform Info: System: Linux (x86_64-pc-linux-gnu) CPU: Intel(R) Core(TM) i5-5250U CPU @ 1.60GHz WORD_SIZE: 64 BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NOAFFINITY Haswell) LAPACK: libopenblas64 LIBM: libopenlibm LLVM: libLLVM-3.7.1 (ORCJIT, broadwell)

julia>

The steps I do, starting from a system without Mocha, are

Pkg.clone("Mocha") Pkg.build("Mocha") Pkg.test("Mocha")

which gives the same error as reported above when 0.5.1-pre+2 is used.

pnth commented 7 years ago

Please find below my test result. I used the Generic Linux binaries at http://julialang.org/downloads/

phuoc@i7 multi-ae % uname -a
Linux i7 4.7.4-1-ARCH #1 SMP PREEMPT Thu Sep 15 15:24:29 CEST 2016 x86_64 GNU/Linux
julia                                                                                                                                                                                                                                                                                                                        [83/83]
phuoc@i7 multi-ae % julia
cd("/linux/share/ml/multi-ae")
               _
   _       _ _(_)_     |  A fresh approach to technical computing
  (_)     | (_) (_)    |  Documentation: http://docs.julialang.org
   _ _   _| |_  __ _   |  Type "?help" for help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 0.5.0 (2016-09-19 18:14 UTC)
 _/ |\__'_|_|_|\__'_|  |  Official http://julialang.org/ release
|__/                   |  x86_64-pc-linux-gnu

               _
   _       _ _(_)_     |  By greedy hackers for greedy hackers.
  (_)     | (_) (_)    |  Documentation: http://docs.julialang.org
   _ _   _| |_  __ _   |  Type "?help" for help.
  | | | | | | |/ _' |  |
  | | |_| | | | (_| |  |  Version 0.5.0 (2016-09-19 18:14 UTC)
 _/ |\__'_|_|_|\__'_|  |  Official http://julialang.org/ release
|__/                   |  x86_64-pc-linux-gnu

> cd("/linux/share/ml/multi-ae")

> Pkg.clone("https://github.com/pluskid/Mocha.jl.git")
INFO: Cloning Mocha from https://github.com/pluskid/Mocha.jl.git
INFO: Computing changes...
INFO: Installing JLD v0.6.3
INFO: Installing LegacyStrings v0.1.1
INFO: Building Blosc
INFO: Building HDF5
INFO: Package database updated

> Pkg.test("Mocha")
INFO: Testing Mocha
WARNING: Method definition info(Any...) in module Base at util.jl:320 overwritten in module Logging at /home/phuoc/.julia/v0.5/Logging/src/Logging.jl:61.
WARNING: Method definition warn(Any...) in module Base at util.jl:350 overwritten in module Logging at /home/phuoc/.julia/v0.5/Logging/src/Logging.jl:61.
Configuring Mocha...
 * CUDA       disabled by default
 * Native Ext disabled by default
Mocha configured, continue loading module...
WARNING: could not import Base.lastidx into LegacyStrings
DefaultBackend = Mocha.CPUBackend
WARNING: using Mocha.setup in module Main conflicts with an existing identifier.
-- Testing simple Adam solver call
04-Oct 20:48:30:INFO:root:Constructing net TEST on Mocha.CPUBackend...
04-Oct 20:48:30:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:30:INFO:root:Setup layers...
04-Oct 20:48:30:INFO:root:Network constructed!
04-Oct 20:48:30:DEBUG:root:#DEBUG Checking network topology for back-propagation
04-Oct 20:48:31:DEBUG:root:Init network TEST
04-Oct 20:48:31:DEBUG:root:Init parameter weight for layer ip1
04-Oct 20:48:31:DEBUG:root:Init parameter bias for layer ip1
04-Oct 20:48:31:DEBUG:root:Init parameter weight for layer ip2
04-Oct 20:48:31:DEBUG:root:Init parameter bias for layer ip2
04-Oct 20:48:31:DEBUG:root:#DEBUG Initializing coffee breaks
04-Oct 20:48:31:DEBUG:root:#DEBUG Entering solver loop
04-Oct 20:48:32:DEBUG:root:Destroying network TEST
-- Testing simple SGD solver call
04-Oct 20:48:32:INFO:root:Constructing net TEST on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:32:INFO:root:Setup layers...
04-Oct 20:48:32:INFO:root:Network constructed!
04-Oct 20:48:32:DEBUG:root:#DEBUG Checking network topology for back-propagation
04-Oct 20:48:32:DEBUG:root:Init network TEST
04-Oct 20:48:32:DEBUG:root:Init parameter weight for layer ip1
04-Oct 20:48:32:DEBUG:root:Init parameter bias for layer ip1
04-Oct 20:48:32:DEBUG:root:Init parameter weight for layer ip2
04-Oct 20:48:32:DEBUG:root:Init parameter bias for layer ip2
04-Oct 20:48:32:DEBUG:root:#DEBUG Initializing coffee breaks
04-Oct 20:48:32:DEBUG:root:#DEBUG Entering solver loop
04-Oct 20:48:32:DEBUG:root:Destroying network TEST
-- Testing network topology with duplicated blobs
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 1 layers...
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 2 layers...
-- Testing network topology with missing blobs
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 1 layers...
-- Testing network topology with circular dependency
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 2 layers...
-- Testing network topology with multiple back-propagate path
    > Good blob sharing
04-Oct 20:48:32:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:32:INFO:root:Topological sorting 5 layers...
04-Oct 20:48:32:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
    > Bad blob sharing
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 6 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
-- Testing network topology with dangling blob
    > Good case
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
    > Bad case
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
    > Good case 2
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 5 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
    > Bad case 2
04-Oct 20:48:33:INFO:root:Constructing net net on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 6 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
04-Oct 20:48:33:DEBUG:root:Destroying network net
-- Testing gradients on simple network (example for gradient checking code)
04-Oct 20:48:33:INFO:root:Constructing net TEST on Mocha.CPUBackend...
04-Oct 20:48:33:INFO:root:Topological sorting 4 layers...
04-Oct 20:48:33:INFO:root:Setup layers...
04-Oct 20:48:33:INFO:root:Network constructed!
-- Testing simple reference counting...
-- Testing glob Utilities
ERROR: LoadError: LoadError: SystemError: unable to read directory layers: No such file or directory
 in readdir(::String) at ./file.jl:303
 in #glob#9(::Symbol, ::Function, ::String, ::Regex) at /home/phuoc/.julia/v0.5/Mocha/src/utils/io.jl:26
 in test_glob() at /home/phuoc/.julia/v0.5/Mocha/test/utils/glob.jl:4
 in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times)
 in process_options(::Base.JLOptions) at ./client.jl:262
 in _start() at ./client.jl:318
while loading /home/phuoc/.julia/v0.5/Mocha/test/utils/glob.jl, in expression starting on line 22
while loading /home/phuoc/.julia/v0.5/Mocha/test/runtests.jl, in expression starting on line 46
==================================[ ERROR: Mocha ]==================================

failed process: Process(`/home/phuoc/packages/julia/bin/julia -Cx86-64 -J/home/phuoc/packages/julia/lib/julia/sys.so --compile=yes --depwarn=yes --check-bounds=yes --code-coverage=none --color=yes --compilecache=yes /home/phuoc/.julia/v0.5/Mocha/test/runtests.jl`, ProcessExited(1)) [1]

====================================================================================
ERROR: Mocha had test errors
 in #test#61(::Bool, ::Function, ::Array{AbstractString,1}) at ./pkg/entry.jl:740
 in (::Base.Pkg.Entry.#kw##test)(::Array{Any,1}, ::Base.Pkg.Entry.#test, ::Array{AbstractString,1}) at ./<missing>:0
 in (::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}})() at ./pkg/dir.jl:31
 in cd(::Base.Pkg.Dir.##2#3{Array{Any,1},Base.Pkg.Entry.#test,Tuple{Array{AbstractString,1}}}, ::String) at ./file.jl:59
 in #cd#1(::Array{Any,1}, ::Function, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./pkg/dir.jl:31
 in (::Base.Pkg.Dir.#kw##cd)(::Array{Any,1}, ::Base.Pkg.Dir.#cd, ::Function, ::Array{AbstractString,1}, ::Vararg{Array{AbstractString,1},N}) at ./<missing>:0
 in #test#3(::Bool, ::Function, ::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258
 in test(::String, ::Vararg{String,N}) at ./pkg/pkg.jl:258

pluskid / Mocha.jl

Mocha tests for julia v0.5 #213