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pluxbiosignals / biosignalsnotebooks

biosignalsnotebooks project includes a set of Jupyter Notebooks explaining some processing tasks which have been specially designed for biosignalsplux and OpenSignals users. A Python package is also present, containing some functions to support biosignalsnotebooks notebooks or to be used independently.
https://www.biosignalsplux.com/notebooks/Categories/MainFiles/biosignalsnotebooks_rev.php
MIT License
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No module named 'bokeh.plotting.figure' #10

Closed mno-93 closed 11 months ago

mno-93 commented 11 months ago

Dear community,

I was using the biosignalsnotebooks python library in the past but recently, I am facing an import issue. I just installed the library via pip install. I am running a notebook in jupyter notebook in a conda environment. I also tried manually installing bokeh in the conda environment which didn't help. Running pip show bokeh brings:

Name: bokeh Version: 2.4.3 Summary: Interactive plots and applications in the browser from Python Home-page: https://github.com/bokeh/bokeh Author: Bokeh Team Author-email: info@bokeh.org License: BSD-3-Clause Location: /homes/mnorden/miniconda3/lib/python3.10/site-packages Requires: Jinja2, numpy, packaging, pillow, PyYAML, tornado, typing-extensions Required-by: biosignalsnotebooks

I am using Python 3.11.4 in the conda environment. Do you have any idea?

GRamosPlux commented 11 months ago

Dear @mno-93 ,

Thank you very much for opening this valuable discussion and for being an important part of our esteemed community of users!

Before exploring the pertinent question that you attentively described, we would like to sincerely apologize for the late reply.

Regarding the reported issue, indeed, your perception is totally correct, the biosignalsnotebooks package still requires an older version of bokeh (v2.4.3).

Taking into consideration the valuable details that you attentively shared with the team, we have the perception that the pip show bokeh command was executed on Python 3.10 instead of the Python 3.11.4 environment.

Name: bokeh
Version: 2.4.3
...
Location: /homes/mnorden/miniconda3/lib/python3.10/site-packages
...

Hoping that you don't consider the following suggestion inadequate, would it be possible to check if the bokeh (v2.4.3) version is also the one installed on the Python 3.11.4 environment?

The team will carefully wait for your extremely important feedback, wishing, in the meantime, a continuation of a positive day!

My best and sincere regards, @GRamosPlux

mno-93 commented 11 months ago

Indeed, this was the case. I don't have an issue anymore.

GRamosPlux commented 11 months ago

Dear @mno-93 ,

These are excellent news, thank you very much for the extremely attentive feedback!

Please, never hesitate to open a new Issue if you face other problems.

Meanwhile, the team strongly wishes you a continuation of an excellent day and that exciting discoveries will arise in your Biosignals researches!

My best and sincere regards, @GRamosPlux