search

pmaxted / ellc

Light curve model for transiting exoplanets and eclipsing binary stars
GNU General Public License v3.0
33 stars 9 forks source link

compilation fails with gfortran #5

Closed svaverbe closed 4 years ago

svaverbe commented 4 years ago

I have tried to install ellc in python anaconda, but the build fails with the following errors:

compiling Fortran 90 module sources creating build/temp.linux-x86_64-3.7/ellc Fortran f77 compiler: /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -ffixed-form -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops Fortran f90 compiler: /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops Fortran fix compiler: /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops creating build/temp.linux-x86_64-3.7/f_src compile options: '-Ibuild/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7 -I/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include -I/home/siegfried/anaconda3/envs/CARMENES/include/python3.7m -c' extra options: '-Jbuild/temp.linux-x86_64-3.7/ellc -Ibuild/temp.linux-x86_64-3.7/ellc' x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/constants.f90 x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/utils.f90 ./f_src/utils.f90:1071:47:

double precision function unitfunc(u,v,npar,par,verbose) 1 Warning: Unused dummy argument 'par' at (1) [-Wunused-dummy-argument] ./f_src/utils.f90:1071:36:

double precision function unitfunc(u,v,npar,par,verbose) 1 Warning: Unused dummy argument 'u' at (1) [-Wunused-dummy-argument] ./f_src/utils.f90:1071:38:

double precision function unitfunc(u,v,npar,par,verbose) 1 Warning: Unused dummy argument 'v' at (1) [-Wunused-dummy-argument] ./f_src/utils.f90:1071:55:

double precision function unitfunc(u,v,npar,par,verbose) 1 Warning: Unused dummy argument 'verbose' at (1) [-Wunused-dummy-argument] x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/coords.f90 x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/gauss_legendre.f90 x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/solve_real_poly.f90 x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/ellipse.f90 x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/stellar.f90 ./f_src/stellar.f90:189:0:

   if(d.eq.bad_dble) return

Warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] ./f_src/stellar.f90:189:0: Warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized] x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/spots.f90 x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/ellc.f90 ./f_src/ellc.f90:1815:0:

   flux_rv_flag(iobs,1) = (flux_1+flux_2+flux_3+refl_1+refl_2)/fnorm

Warning: 'flux_3' may be used uninitialized in this function [-Wmaybe-uninitialized] ./f_src/ellc.f90:1558:0:

     ii = ii_2(iobs,i_spot)

Warning: 'ii_2.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized] ./f_src/ellc.f90:1558:0: Warning: 'ii_2.offset' may be used uninitialized in this function [-Wmaybe-uninitialized] ./f_src/ellc.f90:1371:0:

     ii = ii_1(iobs,i_spot)

Warning: 'ii_1.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized] ./f_src/ellc.f90:1371:0: Warning: 'ii_1.offset' may be used uninitialized in this function [-Wmaybe-uninitialized] ./f_src/ellc.f90:1559:0:

     df = df_2(iobs,i_spot)

Warning: 'df_2.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized] ./f_src/ellc.f90:1559:0: Warning: 'df_2.offset' may be used uninitialized in this function [-Wmaybe-uninitialized] ./f_src/ellc.f90:1372:0:

     df = df_1(iobs,i_spot)

Warning: 'df_1.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized] ./f_src/ellc.f90:1372:0: Warning: 'df_1.offset' may be used uninitialized in this function [-Wmaybe-uninitialized] compiling Fortran sources Fortran f77 compiler: /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -ffixed-form -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops Fortran f90 compiler: /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops Fortran fix compiler: /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops compile options: '-Ibuild/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7 -I/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include -I/home/siegfried/anaconda3/envs/CARMENES/include/python3.7m -c' extra options: '-Jbuild/temp.linux-x86_64-3.7/ellc -Ibuild/temp.linux-x86_64-3.7/ellc' x86_64-conda_cos6-linux-gnu-gfortran:f90: build/src.linux-x86_64-3.7/ellc_f-f2pywrappers2.f90 /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/ellc_fmodule.o build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/fortranobject.o build/temp.linux-x86_64-3.7/f_src/constants.o build/temp.linux-x86_64-3.7/f_src/utils.o build/temp.linux-x86_64-3.7/f_src/coords.o build/temp.linux-x86_64-3.7/f_src/gauss_legendre.o build/temp.linux-x86_64-3.7/f_src/solve_real_poly.o build/temp.linux-x86_64-3.7/f_src/ellipse.o build/temp.linux-x86_64-3.7/f_src/stellar.o build/temp.linux-x86_64-3.7/f_src/spots.o build/temp.linux-x86_64-3.7/f_src/ellc.o build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/ellc_f-f2pywrappers2.o -L/home/siegfried/anaconda3/envs/CARMENES/bin/../x86_64-conda_cos6-linux-gnu/sysroot/lib/../lib -L/home/siegfried/anaconda3/envs/CARMENES/bin/../x86_64-conda_cos6-linux-gnu/sysroot/lib/../lib -lgfortran -o build/lib.linux-x86_64-3.7/ellc/ellc_f.cpython-37m-x86_64-linux-gnu.so /home/siegfried/anaconda3/envs/science/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: /home/siegfried/anaconda3/envs/science/bin/../x86_64-conda_cos6-linux-gnu/sysroot/usr/lib/../lib/Scrt1.o: in function _start': /home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/.build/src/glibc-2.12.2/csu/../sysdeps/x86_64/elf/start.S:99: undefined reference tomain' collect2: error: ld returned 1 exit status error: Command "/home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/ellc_fmodule.o build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/fortranobject.o build/temp.linux-x86_64-3.7/f_src/constants.o build/temp.linux-x86_64-3.7/f_src/utils.o build/temp.linux-x86_64-3.7/f_src/coords.o build/temp.linux-x86_64-3.7/f_src/gauss_legendre.o build/temp.linux-x86_64-3.7/f_src/solve_real_poly.o build/temp.linux-x86_64-3.7/f_src/ellipse.o build/temp.linux-x86_64-3.7/f_src/stellar.o build/temp.linux-x86_64-3.7/f_src/spots.o build/temp.linux-x86_64-3.7/f_src/ellc.o build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/ellc_f-f2pywrappers2.o -L/home/siegfried/anaconda3/envs/CARMENES/bin/../x86_64-conda_cos6-linux-gnu/sysroot/lib/../lib -L/home/siegfried/anaconda3/envs/CARMENES/bin/../x86_64-conda_cos6-linux-gnu/sysroot/lib/../lib -lgfortran -o build/lib.linux-x86_64-3.7/ellc/ellc_f.cpython-37m-x86_64-linux-gnu.so" failed with exit status 1

ERROR: Failed building wheel for ellc Running setup.py clean for ellc Failed to build ellc Installing collected packages: ellc Running setup.py install for ellc ... error ERROR: Command errored out with exit status 1: command: /home/siegfried/anaconda3/envs/CARMENES/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-_9uwjv6u/ellc/setup.py'"'"'; file='"'"'/tmp/pip-install-_9uwjv6u/ellc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-3sldqaxj/install-record.txt --single-version-externally-managed --compile cwd: /tmp/pip-install-_9uwjv6u/ellc/ Complete output (162 lines): running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "ellc.ellc_f" sources f2py options: [] adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/fortranobject.c' to sources. adding 'build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7' to include_dirs. adding 'build/src.linux-x86_64-3.7/ellc_f-f2pywrappers2.f90' to sources. building data_files sources build_src: building npy-pkg config files running build_py creating build/lib.linux-x86_64-3.7 creating build/lib.linux-x86_64-3.7/ellc copying ./init.py -> build/lib.linux-x86_64-3.7/ellc copying ./fluxes.py -> build/lib.linux-x86_64-3.7/ellc copying ./lc.py -> build/lib.linux-x86_64-3.7/ellc copying ./ldy.py -> build/lib.linux-x86_64-3.7/ellc copying ./rv.py -> build/lib.linux-x86_64-3.7/ellc copying ./version.py -> build/lib.linux-x86_64-3.7/ellc running build_ext customize UnixCCompiler C compiler: /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-cc -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -fPIC

creating /tmp/tmp3li6raqz/tmp
creating /tmp/tmp3li6raqz/tmp/tmp3li6raqz
compile options: '-MMD -MF /tmp/tmp3li6raqz/file.c.d -c'
x86_64-conda_cos6-linux-gnu-cc: /tmp/tmp3li6raqz/file.c
customize UnixCCompiler using build_ext
get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
customize Gnu95FCompiler
Found executable /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran
Found executable /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-gfortran
Found executable /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-ld
Found executable /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-ar
Found executable /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-ranlib
/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/distutils/fcompiler/__init__.py:517: UserWarning: FFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release).
  fflags = self.flag_vars.flags + dflags + oflags + aflags
/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/distutils/fcompiler/__init__.py:530: UserWarning: LDFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release).
  linker_so_flags = self.flag_vars.linker_so
/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/distutils/fcompiler/__init__.py:540: UserWarning: LDFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release).
  linker_exe_flags = self.flag_vars.linker_exe
customize Gnu95FCompiler
customize Gnu95FCompiler using build_ext
building 'ellc.ellc_f' extension
compiling C sources
C compiler: /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-cc -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -fPIC

creating build/temp.linux-x86_64-3.7/build
creating build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build
creating build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7
compile options: '-Ibuild/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7 -I/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include -I/home/siegfried/anaconda3/envs/CARMENES/include/python3.7m -c'
x86_64-conda_cos6-linux-gnu-cc: build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/fortranobject.c
x86_64-conda_cos6-linux-gnu-cc: build/src.linux-x86_64-3.7/ellc_fmodule.c
In file included from /home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830:0,
                 from /home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/fortranobject.h:13,
                 from build/src.linux-x86_64-3.7/ellc_fmodule.c:16:
/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
In file included from /home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830:0,
                 from /home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/fortranobject.h:13,
                 from build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/fortranobject.c:2:
/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
build/src.linux-x86_64-3.7/ellc_fmodule.c:109:12: warning: 'f2py_size' defined but not used [-Wunused-function]
 static int f2py_size(PyArrayObject* var, ...)
            ^~~~~~~~~
compiling Fortran 90 module sources
creating build/temp.linux-x86_64-3.7/ellc
Fortran f77 compiler: /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -ffixed-form -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops
Fortran f90 compiler: /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops
Fortran fix compiler: /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops
creating build/temp.linux-x86_64-3.7/f_src
compile options: '-Ibuild/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7 -I/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include -I/home/siegfried/anaconda3/envs/CARMENES/include/python3.7m -c'
extra options: '-Jbuild/temp.linux-x86_64-3.7/ellc -Ibuild/temp.linux-x86_64-3.7/ellc'
x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/constants.f90
x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/utils.f90
./f_src/utils.f90:1071:47:

 double precision function unitfunc(u,v,npar,par,verbose)
                                               1
Warning: Unused dummy argument 'par' at (1) [-Wunused-dummy-argument]
./f_src/utils.f90:1071:36:

 double precision function unitfunc(u,v,npar,par,verbose)
                                    1
Warning: Unused dummy argument 'u' at (1) [-Wunused-dummy-argument]
./f_src/utils.f90:1071:38:

 double precision function unitfunc(u,v,npar,par,verbose)
                                      1
Warning: Unused dummy argument 'v' at (1) [-Wunused-dummy-argument]
./f_src/utils.f90:1071:55:

 double precision function unitfunc(u,v,npar,par,verbose)
                                                       1
Warning: Unused dummy argument 'verbose' at (1) [-Wunused-dummy-argument]
x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/coords.f90
x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/gauss_legendre.f90
x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/solve_real_poly.f90
x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/ellipse.f90
x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/stellar.f90
./f_src/stellar.f90:189:0:

     if(d.eq.bad_dble) return

Warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized]
./f_src/stellar.f90:189:0: Warning: 'd' may be used uninitialized in this function [-Wmaybe-uninitialized]
x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/spots.f90
x86_64-conda_cos6-linux-gnu-gfortran:f90: ./f_src/ellc.f90
./f_src/ellc.f90:1815:0:

     flux_rv_flag(iobs,1) = (flux_1+flux_2+flux_3+refl_1+refl_2)/fnorm

Warning: 'flux_3' may be used uninitialized in this function [-Wmaybe-uninitialized]
./f_src/ellc.f90:1558:0:

       ii = ii_2(iobs,i_spot)

Warning: 'ii_2.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized]
./f_src/ellc.f90:1558:0: Warning: 'ii_2.offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
./f_src/ellc.f90:1371:0:

       ii = ii_1(iobs,i_spot)

Warning: 'ii_1.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized]
./f_src/ellc.f90:1371:0: Warning: 'ii_1.offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
./f_src/ellc.f90:1559:0:

       df = df_2(iobs,i_spot)

Warning: 'df_2.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized]
./f_src/ellc.f90:1559:0: Warning: 'df_2.offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
./f_src/ellc.f90:1372:0:

       df = df_1(iobs,i_spot)

Warning: 'df_1.dim[1].stride' may be used uninitialized in this function [-Wmaybe-uninitialized]
./f_src/ellc.f90:1372:0: Warning: 'df_1.offset' may be used uninitialized in this function [-Wmaybe-uninitialized]
compiling Fortran sources
Fortran f77 compiler: /home/siegfried/anaconda3/envs/CARMENES/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -ffixed-form -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops
Fortran f90 compiler: /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops
Fortran fix compiler: /home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fopenmp -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -O3 -funroll-loops
compile options: '-Ibuild/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7 -I/home/siegfried/anaconda3/envs/CARMENES/lib/python3.7/site-packages/numpy/core/include -I/home/siegfried/anaconda3/envs/CARMENES/include/python3.7m -c'
extra options: '-Jbuild/temp.linux-x86_64-3.7/ellc -Ibuild/temp.linux-x86_64-3.7/ellc'
x86_64-conda_cos6-linux-gnu-gfortran:f90: build/src.linux-x86_64-3.7/ellc_f-f2pywrappers2.f90
/home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/ellc_fmodule.o build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/fortranobject.o build/temp.linux-x86_64-3.7/f_src/constants.o build/temp.linux-x86_64-3.7/f_src/utils.o build/temp.linux-x86_64-3.7/f_src/coords.o build/temp.linux-x86_64-3.7/f_src/gauss_legendre.o build/temp.linux-x86_64-3.7/f_src/solve_real_poly.o build/temp.linux-x86_64-3.7/f_src/ellipse.o build/temp.linux-x86_64-3.7/f_src/stellar.o build/temp.linux-x86_64-3.7/f_src/spots.o build/temp.linux-x86_64-3.7/f_src/ellc.o build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/ellc_f-f2pywrappers2.o -L/home/siegfried/anaconda3/envs/CARMENES/bin/../x86_64-conda_cos6-linux-gnu/sysroot/lib/../lib -L/home/siegfried/anaconda3/envs/CARMENES/bin/../x86_64-conda_cos6-linux-gnu/sysroot/lib/../lib -lgfortran -o build/lib.linux-x86_64-3.7/ellc/ellc_f.cpython-37m-x86_64-linux-gnu.so
/home/siegfried/anaconda3/envs/science/bin/../lib/gcc/x86_64-conda_cos6-linux-gnu/7.3.0/../../../../x86_64-conda_cos6-linux-gnu/bin/ld: /home/siegfried/anaconda3/envs/science/bin/../x86_64-conda_cos6-linux-gnu/sysroot/usr/lib/../lib/Scrt1.o: in function `_start':
/home/rdonnelly/mc/conda-bld/compilers_linux-64_1534865402226/work/.build/src/glibc-2.12.2/csu/../sysdeps/x86_64/elf/start.S:99: undefined reference to `main'
collect2: error: ld returned 1 exit status
error: Command "/home/siegfried/anaconda3/envs/science/bin/x86_64-conda_cos6-linux-gnu-gfortran -Wall -g -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/ellc_fmodule.o build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/build/src.linux-x86_64-3.7/fortranobject.o build/temp.linux-x86_64-3.7/f_src/constants.o build/temp.linux-x86_64-3.7/f_src/utils.o build/temp.linux-x86_64-3.7/f_src/coords.o build/temp.linux-x86_64-3.7/f_src/gauss_legendre.o build/temp.linux-x86_64-3.7/f_src/solve_real_poly.o build/temp.linux-x86_64-3.7/f_src/ellipse.o build/temp.linux-x86_64-3.7/f_src/stellar.o build/temp.linux-x86_64-3.7/f_src/spots.o build/temp.linux-x86_64-3.7/f_src/ellc.o build/temp.linux-x86_64-3.7/build/src.linux-x86_64-3.7/ellc_f-f2pywrappers2.o -L/home/siegfried/anaconda3/envs/CARMENES/bin/../x86_64-conda_cos6-linux-gnu/sysroot/lib/../lib -L/home/siegfried/anaconda3/envs/CARMENES/bin/../x86_64-conda_cos6-linux-gnu/sysroot/lib/../lib -lgfortran -o build/lib.linux-x86_64-3.7/ellc/ellc_f.cpython-37m-x86_64-linux-gnu.so" failed with exit status 1
----------------------------------------

ERROR: Command errored out with exit status 1: /home/siegfried/anaconda3/envs/CARMENES/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-_9uwjv6u/ellc/setup.py'"'"'; file='"'"'/tmp/pip-install-_9uwjv6u/ellc/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /tmp/pip-record-3sldqaxj/install-record.txt --single-version-externally-managed --compile Check the logs for full command output. (CARMENES) siegfried@FD-Computers-PC:/mnt/d/WD/ellc-1.8.5/examples/KPD1946+4340$

gulra001 commented 4 years ago

Did you find a solution to this issue yet? I am stuck at the same point.

pmaxted commented 4 years ago

User reports that this is not an ellc problem but an issue with f2py running in virtual environment.

"I just switched to the base environment where the problem with f2py does not happen. The problem is not related to the code, but the python wrapper. It seems there is a compiler like -shared which solves this problem in all conda environments."

pmaxted commented 4 years ago

Dear Divya, See the update to this issue. Regards, -Pierre

On Wed, 10 Jun 2020 at 20:48, Divya Gulrajani notifications@github.com wrote:

Did you find a solution to this issue yet? I am stuck at the same point.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/pmaxted/ellc/issues/5#issuecomment-642220634, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEUQLXV2LE4OLOSXGH4BRG3RV7PQVANCNFSM4MS3CSBQ .

gulra001 commented 4 years ago

Thank you so much for the update! Divya.