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pmckenz1
/
ipcoal
Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps around msprime.
MIT License
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Toy3 update
#34
pmckenz1
closed
7 months ago
0
Toy3 merge
#33
pmckenz1
closed
2 years ago
0
Merging in smc code
#32
pmckenz1
closed
2 years ago
0
Cosmetic changes - and hdf5 writing fix
#31
pmckenz1
closed
2 years ago
0
unhashable type: 'MassMigration' in Model.py
#30
David-Peede
opened
2 years ago
3
Up with latest msprime
#29
pmckenz1
closed
3 years ago
0
support for gamma distributed rate variation
#28
eaton-lab
closed
4 years ago
1
fixing polytomies
#27
pmckenz1
closed
4 years ago
0
Documentation/Jupyter notebooks not uptodate
#26
mkandziora
opened
4 years ago
0
Show admix edges in draw_sptree
#25
pmckenz1
closed
4 years ago
0
polytomy is species tree = infinite sim
#24
eaton-lab
closed
4 years ago
1
Conda forging and other small features
#23
pmckenz1
closed
4 years ago
0
apply_missing_mask for snps data
#22
eaton-lab
opened
4 years ago
0
VCF tweaking
#21
eaton-lab
closed
4 years ago
0
Longterm: support stitching simulations
#20
eaton-lab
opened
4 years ago
0
Why not return recomb maps as dataframes?
#19
eaton-lab
closed
4 years ago
2
docs and ugh
#18
pmckenz1
closed
4 years ago
0
Support gamma rate variation in SeqModel
#17
eaton-lab
closed
4 years ago
2
Support VCF Writer
#16
eaton-lab
closed
4 years ago
7
overload scipy.linalg.expm call
#15
eaton-lab
opened
4 years ago
1
docs and conda update
#14
pmckenz1
closed
4 years ago
0
window inference
#13
pmckenz1
closed
4 years ago
0
pulling in the nonultrametric changes
#12
pmckenz1
closed
4 years ago
0
ms updates
#11
pmckenz1
closed
4 years ago
0
working in docs and ms changes
#10
pmckenz1
closed
4 years ago
0
pulling in ms edits
#9
pmckenz1
closed
4 years ago
0
manuscript draft in
#8
pmckenz1
closed
4 years ago
0
Getting versions up-to-date
#7
pmckenz1
closed
4 years ago
0
simtrees option, organizational seqmod, subs_model summary
#6
pmckenz1
closed
4 years ago
0
Pulling in Deren changes
#5
pmckenz1
closed
4 years ago
0
custom seqmodel addition
#4
pmckenz1
closed
5 years ago
0
Allow multiple individuals per tip. More ensured name ordering.
#3
eaton-lab
closed
5 years ago
0
added second seed, renamed some vars related to migration
#2
eaton-lab
closed
5 years ago
0
ipcoal reworking
#1
eaton-lab
closed
5 years ago
0