pmelsted / bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
BSD 2-Clause "Simplified" License
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Color graph based on records rather than input files #40

Open GuillaumeHolley opened 3 years ago

GuillaumeHolley commented 3 years ago

Currently, Bifrost colors the graph based on the input files because Bifrost was originally designed with short read data in mind (one color = one set of short reads from a sample). However, it often happens that the dBG is built from multiple assembled genomes within a same input file. For this use case, we want one color per record (see #39).