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pmelsted / bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
BSD 2-Clause "Simplified" License
201 stars 25 forks source link

Houston, I have a problem² #56

Closed LucasBarbosaRocha closed 2 years ago

LucasBarbosaRocha commented 2 years ago

Guillaume, I have a important question...

in July I was using Bifrost and I created a graph with 3 <= k <= 31 and it worked normally.

This week I did git the latest version of bifrost and I can only add sequences for 29 <= k <= 31... To check this question, I put a print inside the first for of the bool function CompactedDBG<U, G> ::add(const string&seq, const bool verbose){...} and it's with an infinite loop.

I took an old version of the bifrost I was using and was able to use it for all 3 <= k <= 31 and add the sequences.

Could you tell me what this question is about?

Thanks, Lucas B. Rocha

GuillaumeHolley commented 2 years ago

Hi @LucasBarbosaRocha,

Could you let me know if this is still an issue for you with the latest version of Bifrost? Otherwise, could you send a minimal example to reproduce the issue?

Thanks, Guillaume

GuillaumeHolley commented 2 years ago

Hi @LucasBarbosaRocha,

Closing the issue for now but feel free to reopen if this is still an issue.

Guillaume