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pmelsted / bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
BSD 2-Clause "Simplified" License
204 stars 25 forks source link

Installation from source fails #58

Closed h836472 closed 2 years ago

h836472 commented 2 years ago

Dear Bifrost Developers,

Compilation and install of bifrost from source code fails as walk trough the lists of commands provided in the manual:

git clone https://github.com/pmelsted/bifrost.git cd bifrost && mkdir build && cd build cmake .. make make install

when calling command "make install", the installation script fails with the following error message:

_-- Installing: /usr/local/include/bifrost/UnitigIterator.tcc -- Installing: /usr/local/include/bifrost/UnitigMap.tcc CMake Error at src/cmake_install.cmake:126 (FILE): file INSTALL cannot find "/SSD8/root/install/bifrost/src/xxhash.c". Call Stack (most recent call first): cmakeinstall.cmake:37 (INCLUDE) make: *** [install] Error 1

Indeed, there is no trace of any xxhash.c file in the src folder. Can you please help me with this issue?

With kind regards,

Balazs Balint

GuillaumeHolley commented 2 years ago

Dear @h836472,

Thank you for noticing, this issue was caused by a line in one of the Cmake file that should have deleted in a previous release. This is normally fixed in the latest commit, do a git pull and make sure to delete your build directory for a clean install.

Let me know if the issue is fixed for you.

Guillaume

h836472 commented 2 years ago

Dear Guillaume,

Thank you for your prompt answer and for updating the code at GitHub. I tried again the installation with a fresh git pull. Now, installation succeeded without any issues!

Thank you again!

Balazs

On Tue, 25 Jan 2022 at 17:20, Guillaume Holley @.***> wrote:

Dear @h836472 https://github.com/h836472,

Thank you for noticing, this issue was caused by a line in one of the Cmake file that should have deleted in a previous release. This is normally fixed in the latest commit, do a git pull and make sure to delete your build directory for a clean install.

Let me know if the issue is fixed for you.

Guillaume

— Reply to this email directly, view it on GitHub https://github.com/pmelsted/bifrost/issues/58#issuecomment-1021361106, or unsubscribe https://github.com/notifications/unsubscribe-auth/AL2BSTGUGAKZOIS4KX3DP3TUX3EULANCNFSM5MYU6QNQ . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

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GuillaumeHolley commented 2 years ago

Good to know :) Closing now.