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pmelsted / bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
BSD 2-Clause "Simplified" License
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This soft can assembly mtDNA ? #69

Closed deyuanyang closed 1 year ago

deyuanyang commented 1 year ago

Hi, Considering the fast assembly of this software, when I provide the mitochondrial genome as "-s", the mitochondrial contigs can be quickly assembled?

Deyuan

GuillaumeHolley commented 1 year ago

Hi @deyuanyang,

Bifrost does not perform assembly, it creates (colored) compacted de Bruijn graphs (in which vertices are unitigs and not contigs) out of input reads/contigs sets.

Guillaume