I was experimenting with the Bifrost query command line tool and noticed that if I specify a single sequence in the input query FASTA file to search a graph with two colors, the output file returns one query line with an empty query_name column; but if I input two query sequences in the query FASTA file, it outputs two query lines but with the second sequence name in place of the first query and the second query_name is empty. I think this must be a bug (the presence/absence counts are otherwise correct):
Hi @pmelsted, Thank you for this cool tool!
I was experimenting with the
Bifrost query
command line tool and noticed that if I specify a single sequence in the input query FASTA file to search a graph with two colors, the output file returns one query line with an emptyquery_name
column; but if I input two query sequences in the query FASTA file, it outputs two query lines but with the second sequence name in place of the first query and the secondquery_name
is empty. I think this must be a bug (the presence/absence counts are otherwise correct):I'm using Bifrost v1.3.5 compiled on Linux. I've uploaded the test files to dataset2.tar.gz
Best, Jessen