issues
search
pmelsted
/
bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
BSD 2-Clause "Simplified" License
201
stars
25
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
GFA output: DA field meaning
#37
tillbaar
closed
3 years ago
1
[Feature request] Programatically add sequence to a colored compacted De Bruijn graph
#36
lrvdijk
opened
3 years ago
0
Can we also extract the location of the unitigs?
#35
rickbeeloo
opened
3 years ago
16
Tutorial on k-mer color API, my current use results in corruption?
#34
lrvdijk
closed
3 years ago
15
mappedSequenceToString: incorrect behavior when strand=false and um.len > 1?
#33
lrvdijk
closed
4 years ago
5
Corrupted tsv when querying colored graph?
#32
phiweger
closed
4 years ago
5
API
#31
LucasBarbosaRocha
closed
4 years ago
5
Python bindings
#30
phiweger
closed
4 years ago
3
Does Bifrost provide k-mer counts?
#29
lrvdijk
closed
4 years ago
2
Add missing return statements to isCoverageFull and getCoverage
#28
lrvdijk
opened
4 years ago
0
last file ignored for fofn input?
#27
ptrebert
closed
4 years ago
4
How to construct de Bruijn graphs using bifrost without reference sequence?
#26
xiekunwhy
closed
4 years ago
2
Wrap codebase in namespace
#25
atli164
opened
4 years ago
0
Enable from source compilation through pipy
#24
winni2k
opened
4 years ago
0
Bifrost query output .tsv merging rows in presence/absence matrix when multithreading
#23
samhorsfield96
closed
4 years ago
8
keep mercy k-mers?
#22
dpellow
closed
4 years ago
1
Bifrost query std::bad_alloc error
#21
ptrebert
closed
4 years ago
19
Conda/Bifrost 1.0.3 illegal instruction error
#20
ptrebert
closed
4 years ago
31
Add a few useful types and functions to UnitigMap
#19
lrvdijk
opened
4 years ago
0
Fix compilation error with custom unitig data
#18
lrvdijk
opened
4 years ago
0
Unnecessary modification of data in neighborIterator?
#17
lrvdijk
closed
4 years ago
3
How to get the unitig/node ID from the query?
#16
mr-eyes
closed
4 years ago
5
bifrost 1.0 now in homebrew
#15
tseemann
closed
4 years ago
1
Add --version flag
#14
tseemann
closed
4 years ago
2
File checks could be improved
#13
ar0ch
closed
4 years ago
4
Wrong GFA header error
#12
Roger-BP
closed
4 years ago
7
Use modern CMake's target_* functions to set compiler flags/features
#11
lrvdijk
opened
4 years ago
4
Python interface to Bifrost
#10
winni2k
closed
4 years ago
16
Bifrost update does not work, complains about the number of threads
#9
marade
closed
4 years ago
5
Release 0.1.tgz has no CMake files?
#8
tseemann
closed
4 years ago
2
Plans to submit to Bioconda?
#7
rpetit3
closed
4 years ago
10
The result unitig of findunitig of compactedDBG doesn't contain the kmer sometimes
#6
XiangLiKyle
closed
4 years ago
3
A compile error while using the C++ API
#5
XiangLiKyle
closed
4 years ago
3
Intuition behind choosing minimizer length
#4
Colelyman
closed
4 years ago
3
How can I read the output color file .bfg_colors?
#3
XiangLiKyle
closed
4 years ago
5
Segfault
#2
fishextinction
closed
5 years ago
3
Merging dev
#1
pmelsted
closed
6 years ago
0
Previous