Closed tuan-tt closed 6 years ago
I extract transcript from GTF with this format
>ENST00000373020 seq >ENST00000494424 seq
run pizzly with command: ../pizzly/build/pizzly -k 31 --gtf ../GRCh38.82/Homo_sapiens.GRCh38.82.gtf --align-score 2 --insert-size 600 --fasta ../trans_38.fa -output test output/fusion.txt
../pizzly/build/pizzly -k 31 --gtf ../GRCh38.82/Homo_sapiens.GRCh38.82.gtf --align-score 2 --insert-size 600 --fasta ../trans_38.fa -output test output/fusion.txt
and got this error could not find any transcript sequences check that the ids in the FASTA file and GTF file match
could not find any transcript sequences check that the ids in the FASTA file and GTF file match
Did I do anything wrong?
I extract transcript from GTF with this format
run pizzly with command:
../pizzly/build/pizzly -k 31 --gtf ../GRCh38.82/Homo_sapiens.GRCh38.82.gtf --align-score 2 --insert-size 600 --fasta ../trans_38.fa -output test output/fusion.txtand got this error
could not find any transcript sequences check that the ids in the FASTA file and GTF file matchDid I do anything wrong?