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pmelsted / pizzly

Fast fusion detection using kallisto
BSD 2-Clause "Simplified" License
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pizzly splitcount 0 #33

Open igordot opened 4 years ago

igordot commented 4 years ago

I ran flatten_json.py on the pizzly json file to get a table of fusions. I got hundreds of filtered fusions. Although some of my paircount are in the thousands (most are at 2), all splitcount are 0.

I also tried the test dataset and only 1 of 9 results had splitcount of 0.

What could this mean? Is there a description of pizzly output somewhere that may help me diagnose the issue? I had 2x75 reads with k=31, so I would expect get some split reads.

medcelerate commented 4 years ago

I have this same issue, furthermore our filtered output json is empty when we have a few large paircounts.