In the heatmaps generated by plotSim the most distant pairs of data points are plotted in white, which can make the heatmap look incomplete. This is only a problem for very small examples, e.g.
set.seed(0xBEEF)
X <- matrix(rnorm(100), 5, 20)
D <- dist(X)
plotSim(D, type = "dissimilarity")
Suggestions
add a black border to each cell of the heatmap (not sure how to do this using base heatmaps; would be easy with ggplot2)
change default color scale (heat.colors are not my favorite anyways!)
second suggestion addressed starting from commit 9383f3ffa0f9175a0a56c1855a5efae6ab8359b1, where heat.colors has been replace by the default palette of ggplot2::scale_fill_gradient (investigate better choices?)
In the heatmaps generated by
plotSim
the most distant pairs of data points are plotted in white, which can make the heatmap look incomplete. This is only a problem for very small examples, e.g.Suggestions
heat.colors
are not my favorite anyways!)