search

pneuvial / adjclust

Adjacency-constrained hierarchical clustering of a similarity matrix
https://pneuvial.github.io/adjclust/
16 stars 8 forks source link

Fix BioC dependencies in GHA "R-CMD-check" #48

Closed pneuvial closed 2 years ago

pneuvial commented 3 years ago

The action https://github.com/pneuvial/adjclust/actions/workflows/R-CMD-check.yaml has never been working properly because the package depends on Bioconductor packages, see e.g.:

https://github.com/pneuvial/adjclust/runs/3160303868?check_suite_focus=true#step:9:56

See if this can be fixed using the biocthis package: http://www.bioconductor.org/packages/release/bioc/vignettes/biocthis/inst/doc/biocthis_dev_notes.html, i.e. simply via:

biocthis::use_bioc_github_action()
tuxette commented 2 years ago

deprecated... using something else