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pneuvial / c3co

Inferring cancer cell clonality from copy-number data
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NOTATION: Rename slot 'S' and 'S0' of 'posFused' to 'Z' and 'Z0' #48

Closed HenrikBengtsson closed 5 years ago

HenrikBengtsson commented 5 years ago 
setClass(
    Class = "posFused",
    representation = representation(
        Y  = "list",        ## original signal
        S  = "list",        ## subclones (aka Z)
        S0 = "list",        ## initial estimates of subclones (aka Z0)
        W  = "matrix",      ## weights
        mu = "numeric",     ## intercept
        E  = "list",        ## signal reconstruction (aka Yhat)
        params  = "numeric",
        failure = "logical"
    )
)