facets (https://github.com/mskcc/facets) seems to be an interesting method for producing PSCN estimates from WGS or WXS data. It would be nice to have a wrapper so that their PSCN estimates can be used by the package.
There is an example file in the facets package (see the package vignette)
mpierrejean
commented
7 years ago
facets (https://github.com/mskcc/facets) seems to be an interesting method for producing PSCN estimates from WGS or WXS data. It would be nice to have a wrapper so that their PSCN estimates can be used by the package.
There is an example file in the
facetspackage (see the package vignette)datafile = system.file("extdata", "stomach.csv.gz", package="facets"); read.csv(datafile, nr=5)