HenrikBengtsson
commented
4 years ago cbind() is irrelevant, which leaves us with:
$ pkg=c3co; echo "$pkg:"; (cd "$pkg"; grep -E "^[ \t]*[^#].*rbind" -- */*.R | grep -vF stringsAsFactors;)
c3co:
R/alignLoci.R: res[[ii]] <- rbind(res[[ii]], dat_cc[[ii]])
R/AllGenerics.R: df.CHR <- do.call(rbind, args=dfList)
R/buildSubclones.R: ss <- rbind(ssAB, ssAA, ssBB)
R/fitC3co.R: allConfig <- rbind(allConfig, aConf)
R/fitC3co.R: bestConfigp <- rbind(bestConfigp, bestConfig)
R/fitC3co.R: bestConfigp <- rbind(bestConfigp, NA)
R/get.Zt.R: X1.Z <- rbind(0, colCumsums(Z))
R/heatmap.3.R: lmat <- rbind(4:3, 2:1)
R/heatmap.3.R: lmat <- rbind(lmat[1, ] + 1, c(NA_real_, 1), lmat[2, ] + 1)
R/heatmap.3.R: image(x=rbind(1:nr), col = RowSideColors[rowInd], axes = FALSE)
R/positiveFusedLasso.R: W <- get.W(Zt = do.call(rbind, args = Zt), Y = do.call(cbind, args = Yc))
R/PSCBSwrapper.R: df <- do.call(rbind, args=lapply(chr, FUN=function(cc) {
R/segmentData.R: Y <- rbind(Y, binDatTCNwithoutNA)
R/segmentData.R: DH <- rbind(DH, binDatDHwithoutNA)
R/segmentData.R: Y <- rbind(Y, binDatTCNwithoutNA)
deleted